Construct: ORF ccsbBroad304_03379

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007818.1_s304c1, BRDN0000399866
Derived from:
ccsbBroadEn_03379
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
C9orf78 (51759)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_03379
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 51759 C9orf78 chromosome 9 open reading f... NM_016520.3 100% 100%
2 human 51759 C9orf78 chromosome 9 open reading f... XM_011518780.3 93% 93% 82_83ins60
3 mouse 227707 BC005624 cDNA sequence BC005624 NM_144885.2 87.3% 95.8% (many diffs)
4 mouse 227707 BC005624 cDNA sequence BC005624 XM_006497943.3 74.2% 81.6% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
933
ORF length:
867
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgcc ggtcgtccgg aagattttcc gtcgccgccg gggcgactcg gagtcagagg
121aagatgagca ggactcagag gaggttcgat taaaactgga agagaccaga gaggtacaga
181acttgaggaa gaggcccaac ggggtgagtg ctgtggcctt gctggtggga gagaaggtac
241aagaggagac cactctagtg gatgatccct ttcagatgaa gacaggtggt atggtggata
301tgaagaaact gaaggaaagg ggcaaagata agatcagtga ggaggaggac ctgcacctgg
361ggacatcgtt ttctgcagaa accaaccgaa gggatgagga tgcagacatg atgaagtaca
421ttgagacaga gctaaagaag aggaaaggga tcgtggaaca tgaggaacag aaagttaagc
481caaagaatgc agaggactgt ctttatgaac ttccagaaaa catccgtgtt tcctcagcaa
541agaagaccga ggagatgctt tccaaccaga tgctgagtgg cattcctgag gtggacctgg
601gcatcgatgc taaaataaaa aatatcattt ccacggagga tgccaaggcc cgtctgctgg
661cagagcagca gaacaagaag aaagacagcg agacctcctt cgtgcctacc aacatggctg
721tgaattatgt gcagcacaac agattttatc atgaggagct caacgcgccc atacggagaa
781acaaagaaga gcccaaggcc cggcccttga gagtaggtga cacggagaag ccagagcctg
841agcggtcccc tcctaaccgc aagcgtcctg ctaacgagaa ggcaactgat gactatcatt
901atgagaagtt caagaaaatg aataggcggt actgcccaac tttcttgtac aaagtggttg
961gtaagcctat ccctaaccct ctcctcggtc tcgattctac gtagtaatga gctagcgcta
1021accggtggcg cgttaagtcg acaatcaacc tctggatta

Download FASTA (ORF) (Full)