Construct: ORF ccsbBroad304_03580

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010392.1_s304c1, BRDN0000410784
Derived from:
ccsbBroadEn_03580
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ABCF3 (55324)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_03580
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55324 ABCF3 ATP binding cassette subfam... NM_018358.2 100% 100%
2 human 55324 ABCF3 ATP binding cassette subfam... NM_001351298.1 99.1% 99.1% 202_203insTGTACAACACTCTGCGTC
3 human 55324 ABCF3 ATP binding cassette subfam... NM_001351300.1 68.8% 68.8% 0_1ins663
4 human 55324 ABCF3 ATP binding cassette subfam... XM_024453624.1 68.8% 68.8% 0_1ins663
5 human 55324 ABCF3 ATP binding cassette subfam... XM_024453625.1 68.8% 68.8% 0_1ins663
6 human 55324 ABCF3 ATP binding cassette subfam... NM_001351299.1 65.1% 62.3% 0_1ins736;99_105delAGCCACA
7 mouse 27406 Abcf3 ATP-binding cassette, sub-f... NM_013852.2 88.4% 96.8% (many diffs)
8 mouse 27406 Abcf3 ATP-binding cassette, sub-f... XR_001781829.1 61.1% (many diffs)
9 mouse 27406 Abcf3 ATP-binding cassette, sub-f... XR_384567.3 60.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2193
ORF length:
2127
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggc gacttgcgcc gaaatcctgc ggagcgagtt ccccgaaatt gacggacaag
121tcttcgacta cgtgaccggc gtcttgcaca gcggcagcgc ggacttcgag tctgtggatg
181acctggtgga agctgtaggg gaactattgc aagaggtgtc cggggacagc aaggatgacg
241cgggcatcag ggccgtgtgc cagcgcatgt acaacactct gcgtctggct gagccacaaa
301gccagggaaa tagccaggtg ctactggacg cccctatcca gttgtcaaag ataacggaga
361actacgactg tggaaccaaa cttccaggac tgctaaagag ggaacagtcc tcgacagtga
421atgcaaagaa gttagagaag gccgaggctc gacttaaggc aaagcaggag aagcgctcag
481agaaggacac gctcaagacc agcaaccctc tagtcttaga agaggcatca gccagccagg
541caggcagcag aaaggagagt cggttggaat catctggcaa gaacaaatcc tatgatgtgc
601gaattgagaa ctttgatgtg tcttttggcg atagagtact gctggctgga gcggatgtga
661acctggcatg gggccgccgt tacgggctgg tggggcggaa tgggttgggg aagacaacgt
721tactgaagat gctggccacc cggagtctgc gggttccagc ccacatttcc ctgctgcacg
781ttgagcaaga ggttgctgga gatgacactc ctgccctgca gagtgtgctg gagagtgaca
841gtgtgcgaga ggatttgcta cggagggagc gggagctcac tgcccagatt gctgctggca
901gggcggaggg ctctgaagct gcagagctgg cagaaatcta tgccaaactg gaggagattg
961aggctgacaa ggcacctgcc agggcatcag tcattctcgc tgggcttggc tttaccccta
1021aaatgcagca gcagcccacc cgggagttct caggtggctg gaggatgagg ctggccctgg
1081cccgggccct ctttgctagg ccagatcttc tgctgttaga tgaacctaca aacatgctgg
1141atgtcagggc catcctgtgg ctggagaatt acctgcagac gtggccctcc accatcctag
1201tcgtctccca cgaccgcaac ttcttgaatg ccatcgccac agacatcatc cacctgcaca
1261gccagcggct agatggttac cggggagact ttgagacctt catcaagagt aagcaggagc
1321ggctgctcaa ccagcagcgt gaatatgagg cgcagcagca gtatcgccag cacatccagg
1381ttttcattga ccggtttcgc tacaatgcca acagggcctc tcaagtgcag agtaaactca
1441agatgctgga gaagctgcct gagctgaagc ctgtggacaa ggaatcagag gtcgtaatga
1501agttccctga tgggtttgag aagttctcgc cgccaattct gcagctagat gaggtggatt
1561tctactacga tccgaagcac gtcatcttca gtcgcctctc tgtgtctgct gatctcgagt
1621ctcgcatctg tgtggttgga gagaatgggg ctgggaagtc taccatgctg aagctgcttt
1681tgggggacct ggcacctgtt cggggcatca gacacgctca caggaatctg aagattggct
1741atttcagcca gcaccatgtg gagcagctgg acctaaacgt cagtgctgtg gaactgctgg
1801cacgcaagtt tcctgggcgg cctgaggagg agtaccgtca ccagctgggt cggtatggca
1861tctccggaga actggccatg cgtcctcttg ccagcctgtc tgggggccag aagagccgag
1921tggcctttgc tcagatgact atgccctgcc ccaacttcta cattctggat gaacccacaa
1981accacctgga catggagacc attgaggctc tgggccgtgc cctcaacaat ttcaggggtg
2041gtgtgattct ggtgtcccac gatgagcgct ttatcaggct ggtgtgccgg gagttgtggg
2101tatgcgaagg aggcggcgtc acccgtgtgg aaggaggatt tgaccagtac cgcgccctcc
2161tccaggaaca gttccgccgc gaaggcttcc tctacccaac tttcttgtac aaagtggttg
2221gtaagcctat ccctaaccct ctcctcggtc tcgattctac gtagtaatga gctagcgcta
2281accggtggcg cgttaagtcg acaatcaacc tctggatta

Download FASTA (ORF) (Full)

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