Construct: ORF ccsbBroad304_03765
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014853.1_s304c1, BRDN0000398770
- Derived from:
- ccsbBroadEn_03765
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- DTWD1 (56986)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_03765
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 56986 | DTWD1 | DTW domain containing 1 | NM_001144955.2 | 100% | 100% | |
| 2 | human | 56986 | DTWD1 | DTW domain containing 1 | NM_020234.6 | 100% | 100% | |
| 3 | human | 56986 | DTWD1 | DTW domain containing 1 | XM_017022419.1 | 100% | 100% | |
| 4 | human | 56986 | DTWD1 | DTW domain containing 1 | XM_017022420.1 | 100% | 100% | |
| 5 | human | 56986 | DTWD1 | DTW domain containing 1 | XM_017022421.1 | 100% | 100% | |
| 6 | human | 56986 | DTWD1 | DTW domain containing 1 | XM_017022422.1 | 100% | 100% | |
| 7 | human | 56986 | DTWD1 | DTW domain containing 1 | XM_017022423.2 | 79.1% | 76.2% | (many diffs) |
| 8 | human | 56986 | DTWD1 | DTW domain containing 1 | XM_017022424.1 | 79.1% | 76.2% | (many diffs) |
| 9 | human | 56986 | DTWD1 | DTW domain containing 1 | XM_011521815.2 | 74.1% | 73% | (many diffs) |
| 10 | human | 56986 | DTWD1 | DTW domain containing 1 | XM_017022425.1 | 74.1% | 73% | (many diffs) |
| 11 | human | 56986 | DTWD1 | DTW domain containing 1 | XM_017022426.1 | 74.1% | 73% | (many diffs) |
| 12 | human | 56986 | DTWD1 | DTW domain containing 1 | XM_017022427.1 | 71.2% | 71% | 0_1ins261;2T>A |
| 13 | human | 56986 | DTWD1 | DTW domain containing 1 | XM_017022428.1 | 71.2% | 71% | 0_1ins261;2T>A |
| 14 | human | 56986 | DTWD1 | DTW domain containing 1 | XM_017022429.1 | 71.2% | 71% | 0_1ins261;2T>A |
| 15 | human | 56986 | DTWD1 | DTW domain containing 1 | XM_017022430.2 | 71.2% | 71% | 0_1ins261;2T>A |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 978
- ORF length:
- 912
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgtc tctcaatcca cctatatttc tcaaacgaag tgaagaaaat agttcaaaat 121 ttgtggaaac aaaacagtca caaactactt ccatagcttc agaagatccc cttcaaaact 181 tatgtttagc atctcaagaa gttcttcaaa aagctcagca aagtgggaga tcaaaatgtc 241 tcaaatgtgg tggttccaga atgttctact gctatacatg ttatgttcca gttgaaaatg 301 tacctattga acagattcca cttgtgaagc ttccattgaa gattgacatc attaaacatc 361 caaatgaaac agatggcaaa agtactgcta tacatgcaaa actcttagca cctgaatttg 421 taaacattta cacgtatccg tgtattccag aatatgaaga aaaggaccat gaagttgcac 481 tcatttttcc tggacctcag tctatctcaa taaaagatat ttcttttcat ctgcaaaaaa 541 ggattcaaaa taatgttaga ggcaaaaatg atgaccctga caagccatct tttaaacgca 601 aaagaactga agaacaagag ttctgtgatt tgaatgacag caagtgcaaa ggcacaacac 661 tgaaaaaaat tatatttata gatagcacct ggaaccaaac aaacaaaata ttcactgatg 721 agcgacttca agggttgtta caagttgagt tgaaaacaag aaaaacttgc ttttggcgcc 781 atcaaaaagg aaagccagat actttccttt ctacaattga agccatttac tactttctgg 841 tagactacca tactgatata ttaaaagaga aatacagagg gcaatatgac aatcttttat 901 ttttctattc ttttatgtac cagttgataa agaatgccaa atgctctgga gataaggaaa 961 caggaaaact tacacataac ccaactttct tgtacaaagt ggttggtaag cctatcccta 1021 accctctcct cggtctcgat tctacgtagt aatgagctag cgctaaccgg tggcgcgtta 1081 agtcgacaat caacctctgg atta