Construct: ORF ccsbBroad304_03895

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010335.1_s304c1, BRDN0000408027
Derived from:
ccsbBroadEn_03895
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SCOC (60592)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_03895
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 60592 SCOC short coiled-coil protein NM_001153635.1 100% 100%
2 human 60592 SCOC short coiled-coil protein NM_001153446.1 99.1% 99.1% 142_144delGCA
3 human 60592 SCOC short coiled-coil protein NM_001153585.1 99.1% 99.1% 142_144delGCA
4 human 60592 SCOC short coiled-coil protein NM_032547.3 99.1% 99.1% 142_144delGCA
5 human 60592 SCOC short coiled-coil protein NM_001153690.1 77.6% 77.6% 141_142ins81
6 human 60592 SCOC short coiled-coil protein NM_001153663.1 67.6% 64.3% (many diffs)
7 human 60592 SCOC short coiled-coil protein NM_001153484.1 67.2% 63.9% (many diffs)
8 human 60592 SCOC short coiled-coil protein NM_001153552.1 51% 47.5% (many diffs)
9 mouse 56367 Scoc short coiled-coil protein XM_011248448.3 86.5% 85.4% (many diffs)
10 mouse 56367 Scoc short coiled-coil protein NM_001039137.3 85.8% 84.8% (many diffs)
11 mouse 56367 Scoc short coiled-coil protein NM_001285992.1 62.5% 66.9% (many diffs)
12 mouse 56367 Scoc short coiled-coil protein XM_006531205.2 62.5% 66.9% (many diffs)
13 mouse 56367 Scoc short coiled-coil protein NM_019708.4 62% 66.3% (many diffs)
14 mouse 56367 Scoc short coiled-coil protein XM_006531204.4 62% 66.3% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
429
ORF length:
363
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgga cgggtccagg aaagaggagg aggaagacag cacattcacc aacatttctc
121ttgcagatga catagaccat tcctcaagaa ttttgtatcc aaggcccaaa agtttgttac
181ccaagatgat gaatgctgac atggatgttg atgctgaaaa tcaagtggaa ctggaggaaa
241aaacaagact tattaatcaa gtgttggaac tccaacacac acttgaagat ctctctgcaa
301gagtagatgc agttaaggaa gaaaatctga agctaaaatc agaaaaccaa gttcttggac
361aatatataga aaatctcatg tcagcttcta gtgtttttca aacaactgac acaaaaagca
421aaagaaagta cccaactttc ttgtacaaag tggttggtaa gcctatccct aaccctctcc
481tcggtctcga ttctacgtag taatgagcta gcgctaaccg gtggcgcgtt aagtcgacaa
541tcaacctctg gatta

Download FASTA (ORF) (Full)