Construct: ORF ccsbBroad304_03931

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008204.1_s304c1, BRDN0000408782
Derived from:
ccsbBroadEn_03931
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RBSN (64145)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_03931
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 64145 RBSN rabenosyn, RAB effector NM_001302378.2 100% 100%
2 human 64145 RBSN rabenosyn, RAB effector NM_022340.4 100% 100%
3 human 64145 RBSN rabenosyn, RAB effector XM_005265384.4 100% 100%
4 human 64145 RBSN rabenosyn, RAB effector XM_005265385.4 100% 100%
5 human 64145 RBSN rabenosyn, RAB effector XM_017007023.1 100% 100%
6 human 64145 RBSN rabenosyn, RAB effector XM_017007024.2 88.6% 88.6% 0_1ins267
7 human 64145 RBSN rabenosyn, RAB effector XM_017007025.2 88.6% 88.6% 0_1ins267
8 human 64145 RBSN rabenosyn, RAB effector XM_011534001.2 88% 87.7% (many diffs)
9 human 64145 RBSN rabenosyn, RAB effector XM_017007026.1 76.4% 76.4% 0_1ins555
10 human 64145 RBSN rabenosyn, RAB effector XM_017007027.2 69.5% 65.6% 0_1ins475;123_124ins242
11 human 64145 RBSN rabenosyn, RAB effector XM_017007028.2 69.5% 65.6% 0_1ins475;123_124ins242
12 mouse 78287 Rbsn rabenosyn, RAB effector NM_030081.2 84.1% 83.7% (many diffs)
13 mouse 78287 Rbsn rabenosyn, RAB effector XM_006506768.3 84.1% 83.7% (many diffs)
14 mouse 78287 Rbsn rabenosyn, RAB effector XM_006506769.3 74.2% 73.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2421
ORF length:
2352
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat ggcttctctg gacgacccag gggaagtgag ggagggcttc ctctgccctc
121tgtgcctgaa ggatctgcag tctttctatc agcttcactc acattacgag gaagaacact
181caggggaaga ccgtgatgtc aaagggcaaa ttaaaagtct tgtccagaag gctaaaaaag
241caaaggacag gttgttgaaa cgagaagggg atgatcgagc agagtcaggg acccaaggat
301atgagtcttt cagctatgga ggggttgatc cttacatgtg ggaaccccag gagcttggtg
361ctgtgagaag ccatctttcc gacttcaaaa aacaccgagc tgctagaatt gaccactatg
421ttgtggaagt caataaacta ataatcaggt tagagaagct cactgcattt gacagaacaa
481atactgagtc tgcaaagatt cgagcaatag aaaagtctgt ggtgccttgg gtcaacgacc
541aggatgtccc tttctgtcca gactgtggga ataagttcag catccggaac cgccgccacc
601actgccgcct ctgcgggtct attatgtgca agaagtgtat ggagctcatc agccttccct
661tggcaaacaa gctcaccagt gccagcaagg agtccctgag cacccacacc agccccagcc
721agtcacccaa cagtgtccat ggctcccgcc gaggcagcat cagcagcatg agcagtgtca
781gctcggtcct ggatgagaag gacgatgacc ggatccgctg ctgtacacac tgcaaggaca
841cgctgctcaa gagagagcag cagattgatg agaaggagca cacacctgac atcgtgaagc
901tctacgagaa attacgactt tgcatggaga aagttgacca gaaagctcca gaatacatca
961ggatggcagc atcattaaat gctggggaga caacctacag tctggaacat gccagtgacc
1021ttcgagtgga agtgcagaaa gtgtatgagc tgatagacgc tttaagtaag aagatcttaa
1081ccttgggctt gaaccaggac cctccaccac atccaagcaa tttgcggctg cagagaatga
1141tcagatactc agctacactt tttgtgcagg aaaagttgct tggtttgatg tcactgccaa
1201ccaaagaaca gtttgaggaa ctgaaaaaga aaaggaagga ggaaatggag aggaagaggg
1261ccgtggagag acaagctgcc ctggagtccc agcgaaggct tgaggaaagg cagagtggcc
1321tggcttctcg agcggccaac ggggaggtgg catctctccg caggggccct gcccccttga
1381gaaaggctga gggctggctc ccactgtcag gaggtcaggg gcagagtgag gactcagacc
1441cgctcctcca gcagatccac aacatcacat cattcatcag gcaggccaag gccgcgggcc
1501gcatggatga agtgcgcact ctgcaggaga acctgcggca gctgcaggac gagtatgacc
1561agcagcagac agagaaggcc atcgagctgt cccggaggca ggctgaggag gaggacctgc
1621agcgggaaca gctgcagatg ttgcgtgaac gggagttgga acgagaaagg gagcagtttc
1681gggtggcatc cctgcacaca cggactcggt ccctggactt cagagaaatc ggcccttttc
1741agctggagcc cagcagagag cctcgcaccc accttgctta tgctttggat ctaggctctt
1801ccccagttcc aagcagcaca gctcccaaga ccccttcact tagctcaact caacccacca
1861gagtgtggtc tgggccccca gccgttggcc aggagcgctt accccagagc agcatgccac
1921agcaacatga ggggccctcc ttaaacccct ttgatgagga agacctctcc agccccatgg
1981aagaggccac tactggtcct cctgctgcag gggtttcctt agacccttca gcccgcatcc
2041tgaaagagta caatcctttc gaggaagagg acgaggagga ggaagcagtg gcagggaatc
2101cattcattca gccagacagc ccagctccta accccttcag tgaggaagac gaacatcccc
2161agcagaggct ctcaagccct ctggttcctg gtaacccctt tgaggaaccc acctgtatca
2221acccctttga gatggacagt gacagtgggc cagaggctga ggagcccata gaggaagagc
2281tcctcctgca gcagatcgat aacatcaagg catacatctt tgatgccaag cagtgcggcc
2341gcctggatga ggtagaggtg ctgacagaga atctgcggga gctgaagcac accctggcca
2401agcagaaggg gggcactgac ttgccaactt tcttgtacaa agtggttggt aagcctatcc
2461ctaaccctct cctcggtctc gattctacgt agtaatgagc tagcgctaac cggtggcgcg
2521ttaagtcgac aatcaacctc tggatta

Download FASTA (ORF) (Full)