Construct: ORF ccsbBroad304_03976

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007694.1_s304c1, BRDN0000402997
Derived from:
ccsbBroadEn_03976
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PORCN (64840)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_03976
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 64840 PORCN porcupine O-acyltransferase NM_203473.3 100% 100%
2 human 64840 PORCN porcupine O-acyltransferase NM_203474.1 98.9% 98.9% (many diffs)
3 human 64840 PORCN porcupine O-acyltransferase NM_203475.3 98.9% 98.9% 703_717del
4 human 64840 PORCN porcupine O-acyltransferase NM_022825.4 98.6% 98.4% 686_687insCAAGAAACGCAAAGCCAG
5 human 64840 PORCN porcupine O-acyltransferase NM_001282167.2 83.1% 82.8% 0_1ins213;473_474insCAAGAAACGCAAAGCCAG
6 human 64840 PORCN porcupine O-acyltransferase XM_024452425.1 65.8% 60% (many diffs)
7 mouse 53627 Porcn porcupine homolog (Drosophila) NM_145908.4 93.5% 97.1% (many diffs)
8 mouse 53627 Porcn porcupine homolog (Drosophila) NM_145907.4 92.5% 96% (many diffs)
9 mouse 53627 Porcn porcupine homolog (Drosophila) NM_023638.4 92.5% 96% (many diffs)
10 mouse 53627 Porcn porcupine homolog (Drosophila) NM_016913.4 92.2% 95.6% (many diffs)
11 mouse 53627 Porcn porcupine homolog (Drosophila) XM_006527644.2 84.9% 88.2% (many diffs)
12 mouse 53627 Porcn porcupine homolog (Drosophila) XM_006527645.2 62.8% 65.1% (many diffs)
13 mouse 53627 Porcn porcupine homolog (Drosophila) XR_878030.2 46.7% (many diffs)
14 mouse 53627 Porcn porcupine homolog (Drosophila) NM_001308474.1 45.9% 47.5% (many diffs)
15 mouse 53627 Porcn porcupine homolog (Drosophila) XM_011247481.1 45.8% 47.3% (many diffs)
16 mouse 53627 Porcn porcupine homolog (Drosophila) NR_131893.1 43.5% (many diffs)
17 mouse 53627 Porcn porcupine homolog (Drosophila) XR_001782756.1 40.6% (many diffs)
18 mouse 53627 Porcn porcupine homolog (Drosophila) XR_001782757.1 40% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1434
ORF length:
1368
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggc cacctttagc cgccaggaat ttttccagca gctactgcaa ggctgtctcc
121tgcctactgc ccagcagggc cttgaccaga tctggctgct ccttgccatc tgcctcgcct
181gccgcctcct ctggaggctc gggttgccat cctacctgaa gcatgcaagc accgtggcag
241gcgggttctt cagcctctac cacttcttcc agctgcacat ggtttgggtc gtgctgctca
301gcctcctgtg ctacctcgtg ctgttcctct gccgacattc ctcccatcga ggcgtcttcc
361tatccgtcac catcctcatc tacctactca tgggtgagat gcacatggta gacaccgtga
421catggcacaa gatgcgaggg gcacagatga ttgtggccat gaaggcagtg tctctgggct
481tcgacctgga ccggggcgag gtgggtacgg tgccctcgcc agtggagttc atgggctacc
541tctacttcgt gggcaccatc gtcttcgggc cctggatatc cttccacagc tacctacaag
601ctgtccaagg ccgcccactg agctgccggt ggctgcagaa ggtggcccgg agcctggcac
661tggccctgct gtgccttgtg ctgtccactt gcgtgggccc ctacctcttc ccgtacttca
721tccccctcaa cggtgaccgc ctccttcgca acaagaaacg caaagccagg tggctgcgag
781cctacgagag tgctgtctcc ttccacttca gcaactattt tgtgggcttt ctttccgagg
841ccacggccac gttggcgggg gctggcttta ccgaggagaa ggatcacctg gaatgggacc
901tgacggtgtc caagccactg aatgtggagc tgcctcggtc aatggtggaa gttgtcacaa
961gctggaacct gcccatgtct tattggctaa ataactatgt tttcaagaat gctctccgcc
1021tggggacctt ctcggctgtg ctggtcacct atgcagccag cgccctccta catggcttca
1081gtttccacct ggctgcggtc ctgctgtccc tggcttttat cacttacgtg gagcatgtcc
1141tccggaagcg cctggctcgg atcctcagtg cctgtgtctt gtcaaagcgg tgcccgccag
1201actgttcgca ccagcatcgc ttgggcctgg gggtgcgagc cttaaacttg ctctttggag
1261ctctggccat cttccacctg gcctacctgg gctccctgtt tgatgtcgat gtggatgaca
1321ccacagagga gcagggctac ggcatggcat acactgtcca caagtggtca gagctcagct
1381gggccagtca ctgggtcact tttggatgct ggatcttcta ccgtctcata ggctgcccaa
1441ctttcttgta caaagtggtt ggtaagccta tccctaaccc tctcctcggt ctcgattcta
1501cgtagtaatg agctagcgct aaccggtggc gcgttaagtc gacaatcaac ctctggatta

Download FASTA (ORF) (Full)