Construct: ORF ccsbBroad304_04082

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010546.1_s304c1, BRDN0000400081
Derived from:
ccsbBroadEn_04082
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SLC52A2 (79581)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_04082
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 79581 SLC52A2 solute carrier family 52 me... NM_001253815.2 100% 100%
2 human 79581 SLC52A2 solute carrier family 52 me... NM_001253816.2 100% 100%
3 human 79581 SLC52A2 solute carrier family 52 me... NM_001363118.2 100% 100%
4 human 79581 SLC52A2 solute carrier family 52 me... NM_001363120.2 100% 100%
5 human 79581 SLC52A2 solute carrier family 52 me... NM_001363121.2 100% 100%
6 human 79581 SLC52A2 solute carrier family 52 me... NM_024531.5 100% 100%
7 human 55065 SLC52A1 solute carrier family 52 me... NM_001104577.1 86.7% 86.1% (many diffs)
8 human 55065 SLC52A1 solute carrier family 52 me... NM_017986.4 86.7% 86.1% (many diffs)
9 human 55065 SLC52A1 solute carrier family 52 me... XM_011523951.2 86.7% 86.1% (many diffs)
10 human 79581 SLC52A2 solute carrier family 52 me... XM_011517300.2 80.2% 80.2% 0_1ins264
11 human 79581 SLC52A2 solute carrier family 52 me... NM_001363122.2 63.1% 63.1% 129_130ins492
12 human 79581 SLC52A2 solute carrier family 52 me... XM_017013821.1 63.1% 63.1% 129_130ins492
13 human 79581 SLC52A2 solute carrier family 52 me... XM_017013822.1 63.1% 63.1% 129_130ins492
14 human 79581 SLC52A2 solute carrier family 52 me... NR_045600.2 62.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1401
ORF length:
1335
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggc agcacccacg cccgcccgtc cggtgctgac ccacctgctg gtggctctct
121tcggcatggg ctcctgggct gcggtcaatg ggatctgggt ggagctacct gtggtggtca
181aagagcttcc agagggttgg agcctcccct cttacgtctc tgtgcttgtg gctctgggga
241acctgggtct gctggtggtg accctctgga ggaggctggc cccaggaaag gacgagcagg
301tccccatccg ggtggtgcag gtgctgggca tggtgggcac agccctgctg gcctctctgt
361ggcaccatgt ggccccagtg gcaggacagt tgcattctgt ggccttctta gcactggcct
421ttgtgctggc actggcatgc tgtgcctcga atgtcacttt cctgcccttc ttgagccacc
481tgccacctcg cttcttacgg tcattcttcc tgggtcaagg cctgagtgcc ctgctgccct
541gcgtgctggc cctagtgcag ggtgtgggcc gcctcgagtg cccgccagcc cccatcaacg
601gcacccctgg ccccccgctc gacttccttg agcgttttcc cgccagcacc ttcttctggg
661cactgactgc ccttctggtc gcttcagctg ctgccttcca gggtcttctg ctgctgttgc
721cgccaccacc atctgtaccc acaggggagt taggatcagg cctccaggtg ggagccccag
781gagcagagga agaggtggaa gagtcctcac cactgcaaga gccaccaagc caggcagcag
841gcaccacccc tggtccagac cctaaggcct atcagcttct atcagcccgc agtgcctgcc
901tgctgggcct gttggccgcc accaacgcgc tgaccaatgg cgtgctgcct gccgtgcaga
961gcttttcctg cttaccctac gggcgtctgg cctaccacct ggctgtggtg ctgggcagtg
1021ctgccaatcc cctggcctgc ttcctggcca tgggtgtgct gtgcaggtcc ttggcagggc
1081tgggcggcct ctctctgctg ggcgtgttct gtgggggcta cctgatggcg ctggcagtcc
1141tgagcccctg cccgcccctg gtgggcacct cggcgggggt ggtcctcgtg gtgctgtcgt
1201gggtgctgtg tcttggcgtg ttctcctacg tgaaggtggc agccagctcc ctgctgcatg
1261gcgggggccg gccggcattg ctggcagccg gcgtggccat ccaggtgggc tctctgctcg
1321gcgctgttgc tatgttcccc ccgaccagca tctatcacgt gttccacagc agaaaggact
1381gtgcagaccc ctgtgactcc tgcccaactt tcttgtacaa agtggttggt aagcctatcc
1441ctaaccctct cctcggtctc gattctacgt agtaatgagc tagcgctaac cggtggcgcg
1501ttaagtcgac aatcaacctc tggatta

Download FASTA (ORF) (Full)

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