Construct: ORF ccsbBroad304_04189
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010468.1_s304c1, BRDN0000408348
- Derived from:
- ccsbBroadEn_04189
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- FBXO11 (80204)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_04189
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 80204 | FBXO11 | F-box protein 11 | NM_001374325.1 | 100% | 100% | |
| 2 | human | 80204 | FBXO11 | F-box protein 11 | NM_025133.4 | 100% | 100% | |
| 3 | human | 80204 | FBXO11 | F-box protein 11 | XM_017005016.2 | 96.8% | 96.8% | 2400_2480del |
| 4 | human | 80204 | FBXO11 | F-box protein 11 | NM_001190274.2 | 90.9% | 90.9% | 1_252del |
| 5 | human | 80204 | FBXO11 | F-box protein 11 | XM_017005015.1 | 90.8% | 90.8% | 1_252del;439_440insCAG |
| 6 | human | 80204 | FBXO11 | F-box protein 11 | XM_005264572.5 | 88.3% | 88.3% | 1_252del;2652_2732del |
| 7 | human | 80204 | FBXO11 | F-box protein 11 | XM_005264573.5 | 88.2% | 88.2% | 1_252del;439_440insCAG;2649_2729del |
| 8 | mouse | 225055 | Fbxo11 | F-box protein 11 | NM_001348248.1 | 93.5% | 99.7% | (many diffs) |
| 9 | mouse | 225055 | Fbxo11 | F-box protein 11 | XM_006524204.3 | 93.5% | 99.7% | (many diffs) |
| 10 | mouse | 225055 | Fbxo11 | F-box protein 11 | NM_001081034.2 | 84.8% | 90.4% | (many diffs) |
| 11 | mouse | 225055 | Fbxo11 | F-box protein 11 | XM_006524203.3 | 84.6% | 90.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2598
- ORF length:
- 2529
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcaccat ggttgcagaa gaatcaggtc ctggtgcaca aaatagtcca taccaacttc 121 gtagaaaaac tcttttgccg aaaagaacag cgtgtcccac aaagaacagt atggagggcg 181 cctcaacttc aactacagaa aactttggtc atcgtgcaaa acgtgcaaga gtgtctggaa 241 aatcacaaga tctatcagca gcacctgctg aacagtatct tcaggagaaa ctgccagatg 301 aagtggttct aaaaatcttc tcttacttgc tggaacagga tctttgtaga gcagcttgtg 361 tatgtaaacg cttcagtgaa cttgctaatg atccaatttt gtggaaacga ttatatatgg 421 aagtatttga atatactcgc cctatgatgc atcctgaacc tggaaaattc taccagatta 481 atccagaaga gtatgaacat ccaaatccct ggaaagagag tttccagcag ttgtataaag 541 gtgcacatgt aaagccagga tttgctgaac atttctacag taaccctgca agatataaag 601 gaagagaaaa tatgttgtat tatgatacta ttgaagatgc ccttggtggg gtacaagagg 661 ctcattttga tggacttatc tttgttcatt ctggaatata tactgatgaa tggatatata 721 ttgaatctcc aatcaccatg attggtgcag cacctgggaa agtggcagac aaagttataa 781 ttgaaaacac tagagattca accttcgttt ttatggaagg ctctgaagat gcttatgttg 841 gatatatgac aataaggttt aaccctgatg acaaatctgc acaacaccac aatgcacacc 901 actgcttaga gattacagta aattgtagcc ctattattga tcactgtatc atccgaagta 961 catgtacagt tggttctgca gtatgtgtta gtggtcaagg agcatgtccc accatcaagc 1021 actgtaacat cagtgactgt gaaaatgttg gactatatat aacagatcat gcacagggaa 1081 tatatgagga taatgaaatt tccaataatg cgttagctgg gatttgggtt aaaaatcatg 1141 gaaacccaat tattagacgg aatcatattc atcatggacg tgatgttggt gtgttcacat 1201 ttgatcatgg catgggttac tttgaaagtt gcaatataca cagaaatagg atagcaggct 1261 ttgaagtaaa agcctatgct aaccctacag tggttcgatg tgaaattcac catgggcaga 1321 ctggaggaat atatgtccat gaaaaaggaa gaggacaatt catagagaat aaaatctatg 1381 caaacaactt tgcaggtgta tggattacct caaatagtga cccaacaata aggggaaatt 1441 ctatatttaa tggaaatcaa ggaggagttt acatctttgg tgatggacga ggccttattg 1501 aaggaaatga catttatggc aatgcattag caggaattca aattaggaca aacagttgtc 1561 caattgttcg gcataacaaa attcatgatg gccagcatgg tgggatttat gtgcatgaaa 1621 agggacaagg agtaatagaa gagaatgaag tttatagtaa cactctagct ggagtctggg 1681 tgacaactgg cagcactcca gtactgagaa gaaaccggat acacagtggc aagcaggttg 1741 gtgtttattt ttatgacaat ggacatggag tgctagaaga caatgatatc tataatcata 1801 tgtattcagg ggttcagata aggactggaa gcaaccccaa aattagacgc aacaaaatct 1861 ggggaggaca gaatggtgga attctagttt ataattctgg tctaggctgt atagaagaca 1921 atgaaatatt tgacaatgca atggctggag tctggattaa gacagatagt aatccTACAC 1981 TAAGAAGAAA TAAAATCCAT GATGGAAGAG ATGGTGGCAT CTGTATATTT AATGGGGGTC 2041 GAGGTCTCCT TGAAGAAAAT GATATTTTCA GGAATGCTCA AGCAGGTGTT CTCATCAGCA 2101 CTAATAGTCA TCCAATCTTA AGGAAAAACA GAATATTTGA TGGATTTGCC GCAGGTATTG 2161 AAATTACAAA TCACGCAACT GCAACACTAG AAGGCAATCA GATTTTTAAC AACCGGTTTG 2221 GAGGCTTATT TTTAGCATCT GGTGTTAATG TGACAATGAA AGATAACAAA ATAATGAACA 2281 ATCAAGATGC CATAGAAAAG GCTGTTAGTA GAGGCCAATG TTTATATAAA ATATCAAGTT 2341 ATACCAGCTA TCCCATGCAT GATTTCTACA GATGTCATAC TTGTAACACC ACAGATCGAA 2401 ATGCCATATG TGTGAACTGC ATTAAGAAGT GCCATCAGGG ACATGATGTA GAGTTTATTA 2461 GACATGATAG GTTTTTCTGT GACTGTGGTG CTGGAACACT GTCTAATCCT TGTACATTAG 2521 CTGGTGAGCC TACACATGAT ACAGATACAC TATATGACTC TGCTCCACCT ATAGAATCTA 2581 ATACATTGCA GCACAACTTG CCAACTTTCT TGTACaaagt ggttggtaag cctatcccta 2641 accctctcct cggtctcgat tctacgtagt aatgagctag cgctaaccgg tggcgcgtta 2701 agtcgacaat caacctctgg atta