Construct: ORF ccsbBroad304_04389

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004051.1_s304c1, BRDN0000462072
Derived from:
ccsbBroadEn_04389
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
HOOK3 (84376)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_04389
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 84376 HOOK3 hook microtubule tethering ... NM_032410.4 100% 100%
2 mouse 320191 Hook3 hook microtubule tethering ... NM_207659.3 90.4% 97.7% (many diffs)
3 mouse 320191 Hook3 hook microtubule tethering ... XM_006509148.2 90.1% 97.5% (many diffs)
4 mouse 320191 Hook3 hook microtubule tethering ... XM_006509150.2 85.1% 92% (many diffs)
5 mouse 320191 Hook3 hook microtubule tethering ... XM_006509149.3 84.3% 89.4% (many diffs)
6 mouse 320191 Hook3 hook microtubule tethering ... XM_006509151.3 69.3% 73.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2220
ORF length:
2154
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgtt cagcgtagag tcgctggagc gggcggagct gtgcgagagc ctcctcactt
121ggatccagac atttaatgtg gatgcaccat gccagaccgt ggaagattta acgaatgggg
181ttgtgatggc ccaggttctt caaaagatag atcctgcata ttttgatgaa aattggctaa
241acagaatcaa aactgaagta ggagataatt ggaggctaaa gataagcaat ttaaagaaaa
301ttttaaaagg aatcttggat tataatcatg agattttagg acagcaaatt aatgacttta
361cccttcctga tgtgaacctt attggggagc attctgatgc agcagagctt ggaaggatgc
421ttcagctcat cttaggctgt gctgtgaact gtgaacagaa gcaagagtac atccaagcca
481ttatgatgat ggaggaatct gttcaacatg ttgtcatgac agccattcaa gagctgatga
541gtaaagaatc tcctgtctct gctggaaatg atgcctatgt tgaccttgat cgtcagctga
601agaaaactac agaggaacta aatgaagctt tgtcagcaaa ggaagaaatt gctcaaagat
661gccatgaact ggatatgcag gttgcagcat tgcaggaaga gaaaagtagt ttgttggcag
721agaatcaggt attaatggaa agactcaatc aatctgattc tatagaagac cctaacagtc
781cagcaggaag aaggcatttg cagctccaga ctcaattaga acagctccaa gaagaaacat
841tcagactaga agcagccaaa gatgattatc gaatacgttg tgaagagtta gaaaaggaga
901tctctgaact tcggcaacag aatgatgaac tgaccacttt ggcagatgaa gctcagtctc
961tgaaagatga gatcgacgtg ctgagacatt cttctgataa agtatctaaa ctagaaggtc
1021aagtagaatc ttataaaaag aagctagaag accttggtga tttaaggcgg caggttaaac
1081tcttagaaga gaagaatacc atgtatatgc agaatactgt cagtctagag gaagagttaa
1141gaaaggccaa cgcagcgcga agtcaacttg aaacctacaa gagacaggta gtagaactac
1201aaaacagatt atccgaagaa tcaaagaaag cagataaact agattttgaa tataagcggc
1261taaaagaaaa agttgacagt cttcaaaaag aaaaggacag gctgagaaca gaaagggatt
1321ctctgaagga aaccattgaa gagcttcgtt gtgtacaagc tcaagaaggg cagctcacaa
1381cacaagggtt aatgcctctt ggaagtcagg agtcttcaga cagtctagct gcagagattg
1441ttacacctga aatcagggag aaacttattc gtcttcagca tgagaataag atgttaaagc
1501ttaaccaaga aggttcggac aatgaaaaaa tagccttatt gcagagcctt ctagatgatg
1561caaatctacg caagaatgaa ctggagacag agaataggct ggtgaatcaa agacttctgg
1621aagtacagtc acaagttgaa gaattacaaa aatctttaca ggatcaaggc tcaaaagcag
1681aagattcagt ccttctaaaa aagaagcttg aagaacatct agagaagctg catgaggcca
1741ataatgaact acagaagaag agagccatta ttgaagatct cgagccaaga tttaacaaca
1801gctccttaaa aattgaagaa ttacaagaag ctttacgaaa gaaagaggaa gaaatgaagc
1861aaatggaaga acgatacaaa aaatacttag agaaagccaa aagtgtcatc cgtactttag
1921atcctaaaca gaatcaagga gcagcaccag aaatacaagc tcttaaaaat cagctccagg
1981aacgagaccg actgttccac tcattagaga aagaatatga gaaaacaaag agtcagagag
2041agatggaaga gaaatatatt gttagtgcct ggtacaatat gggaatgacc ctgcataaaa
2101aggcagctga agatagactg gcaagcacag gctcagggca gtcatttctg gcgaggcaga
2161ggcaagcgac cagcagcaga agatcatacc caggccacgt gcagccggcc acagcaaggt
2221acccaacttt cttgtacaaa gtggttggta agcctatccc taaccctctc ctcggtctcg
2281attctacgta gtaatgagct agcgctaacc ggtggcgcgt taagtcgaca atcaacctct
2341ggatta

Download FASTA (ORF) (Full)

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