Construct: ORF ccsbBroad304_05042

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008699.1_s304c1, BRDN0000411445
Derived from:
ccsbBroadEn_05042
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CDPF1 (150383)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_05042
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 150383 CDPF1 cysteine rich DPF motif dom... NM_207327.5 100% 100%
2 human 150383 CDPF1 cysteine rich DPF motif dom... XM_011529965.2 100% 100%
3 human 150383 CDPF1 cysteine rich DPF motif dom... XM_011529963.2 70.2% 38.4% (many diffs)
4 human 150383 CDPF1 cysteine rich DPF motif dom... XM_011529964.2 67.4% 33.9% (many diffs)
5 human 150383 CDPF1 cysteine rich DPF motif dom... XM_011529960.2 56.6% 39.9% 225_228delGGTG;374_651del
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
435
ORF length:
369
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggc gtcccatgta gagtgccgtc ctctgggagt gtttgagtgt gaactctgta
121ccttgacagc tccgtacagc tatgtgggac agaagccccc caacacccag tcgatggtcc
181tcctggagga aagctatgtc atgaaggatc ccttcacctc cgacaaggac agattcctgg
241tcctcggctc gtgctgcagt ttgtgcagca ggctggtgtg tgtgggcccg gaatgcagtt
301tattctactc caagagattc tgcctccctt gtgtccggga gaacatcaat gcttttcctc
361aggaaattcg gcaagacttg gagaaaagga aagctccatc aaagaggacc cccagccagc
421ccggttctcg gacgtgccca actttcttgt acaaagtggt tggtaagcct atccctaacc
481ctctcctcgg tctcgattct acgtagtaat gagctagcgc taaccggtgg cgcgttaagt
541cgacaatcaa cctctggatt a

Download FASTA (ORF) (Full)