Construct: ORF ccsbBroad304_05117

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001586.1_s304c1, BRDN0000400713
Derived from:
ccsbBroadEn_05117
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RETREG3 (162427)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_05117
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 162427 RETREG3 reticulophagy regulator fam... NM_178126.4 100% 100%
2 human 162427 RETREG3 reticulophagy regulator fam... XM_011524440.2 79.1% 79.1% 0_1ins291
3 human 162427 RETREG3 reticulophagy regulator fam... NR_026697.2 35.8% 1_103del;447_448ins31;1471_3778del
4 mouse 67998 Retreg3 reticulophagy regulator fam... NM_026501.2 90.3% 91.2% (many diffs)
5 mouse 67998 Retreg3 reticulophagy regulator fam... NM_028933.3 54.7% 55.3% (many diffs)
6 mouse 67998 Retreg3 reticulophagy regulator fam... XM_006534032.3 53% 53.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1464
ORF length:
1398
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggc tgaggccgaa ggggttccca cgaccccagg cccggcttcg gggtcgactt
121tcaggggccg ccgagatgtg tcaggctcct gggagcggga ccagcaggtt gaggcggcgc
181agcgggccct ggtggaggtg ctggggcctt acgagcctct gctgagtcgg gtgcaggcag
241ccctggtgtg ggagcggcca gctaggagcg ctctgtggtg cctggggctg aacgcggctt
301tctggttttt tgccctgaca tctcttcgtc ttgtgttttt acttgcattt ggcttgatga
361tcattgtgtg tattgatcaa tggaagaaca aaatctggcc tgaaataaaa gtgccaagac
421ccgacgcatt agacaatgag agctggggct ttgtgcaccc tcggttgctc agcgtgcccg
481agctctgcca ccatgtagct gaagtctggg ttagtgggac cattttcata aggaatgttt
541tgcttttcaa aaagcaaaac ccaggcaagt tctgcttgct gagctgtggg atactgacct
601ttttggctgt cttgggccgc tacgtccctg ggcttctgct gtcctacttg atgcttgtca
661ctgtcatgat gtggcccctt gctgtgtacc accgactgtg ggatcgagca tatgtgcggc
721tgaagccagc tctgcagcgg ctagacttca gtgtccgtgg ctacatgatg tccaagcaga
781gagagagaca atTACGCCGC AGAGCTCTCC ACCCAGAACG AGCCATGGAC AACCACAGTG
841ACAGCGAAGA GGAGCTTGCT GCCTTCTGTC CTCAGCTGGA CGATTCTACT GTTGCCAGGG
901AATTGGCCAT CACAGACTCT GAGCACTCAG ACGCTGAAGT CTCCTGTACA GACAATGGCA
961CATTCAATCT TTCAAGGGGC CAAACACCTC TAACGGAAGG CTCTGAAGAC CTAGATGGTC
1021ACAGTGATCC AGAGGAATCC TTTGCCAGAG ACCTTCCAGA CTTCCCTTCC ATTAATATGG
1081ATCCTGCTGG CCTGGATGAT GAGGACGACA CTAGCATTGG CATGCCCAGC TTGATGTACC
1141GTTCTCCGCC AGGGGCTGAG GAGCCCCAGG CCCCACCTGC CAGCCGGGAC GAGGCTGCGC
1201TGCCGGAGCT CCTGCTTGGT GCTCTTCCTG TAGGATCCAA CCTCACCAGC AACCTTGCCA
1261GCCTGGTCTC CCAGGGTATG ATTCAGCTGG CCTTGTCAGG GGCCTCCCAA CCAGGCCCTT
1321CTGGAGCACC TGCCCAGAGA GCAACGAGAG GCTTCCTCCG GTCCCCCAGT TCAGACCTGG
1381ACACTGATGC TGAGGGGGAT GACTTTGAAC TTCTGGACCA GTCGGAGCTG AGTCAGCTGG
1441ACCCTGCCAG TTCTAGGAGC CACTGCCCAA CTTTCTTGTA Caaagtggtt ggtaagccta
1501tccctaaccc tctcctcggt ctcgattcta cgtagtaatg agctagcgct aaccggtggc
1561gcgttaagtc gacaatcaac ctctggatta

Download FASTA (ORF) (Full)

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