Construct: ORF ccsbBroad304_05401
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005040.1_s304c1, BRDN0000407670
- Derived from:
- ccsbBroadEn_05401
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- STPG2 (285555)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_05401
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 285555 | STPG2 | sperm tail PG-rich repeat c... | NM_174952.3 | 100% | 100% | |
| 2 | human | 285555 | STPG2 | sperm tail PG-rich repeat c... | XM_024454012.1 | 79.7% | 78.2% | (many diffs) |
| 3 | human | 285555 | STPG2 | sperm tail PG-rich repeat c... | XM_011531886.3 | 78.7% | 76.2% | (many diffs) |
| 4 | human | 285555 | STPG2 | sperm tail PG-rich repeat c... | XM_017008049.2 | 74.5% | 69.9% | (many diffs) |
| 5 | human | 285555 | STPG2 | sperm tail PG-rich repeat c... | XM_017008051.2 | 53.5% | 48.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1443
- ORF length:
- 1377
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgta tgatcgggct ccccgcctgc tcaaattggc tgaaggtggc agcactgagg 121 cccatgtggg tcctggatcc taccaggtac ctttcctgaa gcagcaggcg acaggtagta 181 atgcaccatt tctttctttg actgccagag aaagtacttt taccattgcc tctagcattg 241 agaaagctgt tccaggtcca ggacactata atgtttcaga agcacagaaa atttcaagat 301 cacctacact taccagaagt gttgatgttc cttcaattcc ttcttgtgga aagtcatatg 361 gttatcatat taatgatgat ggcagtatta taaaatgttt tccacctgct tgtgacagta 421 cacttggtcc agcatactac aaacctcaat ttgatgtttc caatgcaact ttgaaataca 481 aaggtataca ttttggcaac tcttcaggaa gacaagagtt acctaaaaag tcaggtcctg 541 gtccaggaca gtatgatata gtccagaaaa agacatcata ttatgaaaat gttaacatca 601 agagagatca acaacaaaat tattgttcat ttatcccacg actatatgaa ataatagtat 661 tgcaggagaa aaaaaagaga tttttaccta tgaaatcaat caccccggct cctggcacat 721 ataatgaacc tcgaactgct ctcaagtctt tgaagaaaac atcaggactg aaaaatattc 781 catttggtca aagtgctgtt cgattcacac aggacatcag gacagaggaa atgccaggtc 841 ctggatttta taatgtcttg aacaatacta taattgccag tgttagaaat atctgctcaa 901 agaaacagaa gaaaagtgca tttggttctt ctgttcctcg gactttcttc tcggttcaga 961 aagaagcttg tgctacccct ggacctgctg attatcagga attttggcat tcacagggtg 1021 tgggaatttc tgatgaatta cctaacttga ctaacaaata tgctgctttc ttgtcaagag 1081 ccaaaagaac tatgaaagta ccagatatgg ttattccagc gccaggcagc tatgatgttc 1141 acaaatcata tgagatgtcc caagttaagc ataaatatat gccacctcgt agtttagtgg 1201 ctaaaagaaa acatgcctct tttcttagtg caactcctcg gtgcctagaa aaagtgactg 1261 atgggccagg tcctgcagca tacaatcctg ttttaaggaa atcttgcccc atacccttat 1321 ttgtgaaagc atcaaagcgc tttgaagagt ccaaagagat tactccaggc ccagcaacat 1381 atgagatatc ccaggagaaa aagaaaggaa atctcattgg tgaaatggct gctgatataa 1441 tgtgtccaac tttcttgtac aaagtggttg gtaagcctat ccctaaccct ctcctcggtc 1501 tcgattctac gtagtaatga gctagcgcta accggtggcg cgttaagtcg acaatcaacc 1561 tctggatta