Construct: ORF ccsbBroad304_05422
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010147.1_s304c1, BRDN0000405132
- Derived from:
- ccsbBroadEn_05422
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- VN1R5 (317705)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_05422
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 317705 | VN1R5 | vomeronasal 1 receptor 5 (g... | NM_173858.1 | 100% | 100% | |
| 2 | human | 317705 | VN1R5 | vomeronasal 1 receptor 5 (g... | NR_160309.1 | 99.5% | 136T>C;291C>T;1072_1074delTGA |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1140
- ORF length:
- 1071
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcaccat gttgaaattg gttattattg agaacatggc agaaattatg ctattctcat 121 tagatctctt gcttttctcc acagatatcc tttgctttaa ttttccttct aagatgatca 181 aacttcctgg ttttattacc atacaaatct tcttttatcc acaagccagc tttggaattt 241 cagcaaacac catccttctt cttttccaca tcttcacctt tgttttcagt cacaggtcta 301 agtccattga catgataatt agtcacctgt ctctcatcca catactgctg ctcttcactc 361 aggcaatatt ggtgtcctta gacttctttg gttcacagaa tactcaggat gatcttaggt 421 ataaggtcat tgtcttttta aacaaggtga tgaggggcct ctccatctgc accccctgcc 481 tcctgagtgt gctccaggcc atcatcagcc ccagcatctt ctccttggca aagctcaaac 541 atccttctgc aagtcacatc ttaggattct tccttttctc atgggtcctc aacatgttca 601 ttggtgtaat cttctgctgt acactgcggc tacccccagt gaaacggggc cagtcttctg 661 tttgtcatac agcactgttc ctttttgccc atgagctaca cccacaggag actgtttttc 721 acactaatga ctttgaggga tgtcaccttt atagggttca tggtcctctc aagaggctac 781 atggtgatta ttttatacag acaataagag gctatctcag tgccttcaca cagccagcct 841 gtccccgagt ctcaccagtg aaaagagcct cccaggctat cttactgctg gtgagttttg 901 tcttcacata ctgggtggac tttacgttct cattttcagg aggtgtgaca tggataaatg 961 attctctgct agtgtggctc caggttattg tggccaatag ctatgccgca attagtcctt 1021 tgatgctaat ttatgctgat aaccaaatat tcaagactct gcaaatgtta tggtttaaat 1081 atttgtctcc tccaaagctc atgttgaaat ttaatcgcca atgtggcagt actaagaagt 1141 tgccaacttt cttgtacaaa gtggttggta agcctatccc taaccctctc ctcggtctcg 1201 attctacgta gtaatgagct agcgctaacc ggtggcgcgt taagtcgaca atcaacctct 1261 ggatta