GPP Web Portal - Clone Details

Construct: ORF ccsbBroad304_05700

Construct Description:

Construct Type:: ORF
Other Identifiers:: ORF007612.1_s304c1, BRDN0000404970
Derived from:: ccsbBroadEn_05700
DNA Barcode:: None
Epitope Tag:: V5
Notes:: No stop codon in insert

Originally Annotated References:

Gene:: CXorf40B (541578)

Vector Information:

Vector Backbone:: pLX_304
Pol II Cassette 1:: PGK-BlastR
Pol II Cassette 2:: CMV-ccsbBroad304_05700
Selection Marker:: BlastR
Visible Reporter:: n/a
Epitope Tag:: V5

Current transcripts matched by this ORF:

	Taxon	Gene	Symbol	Description	Transcript	Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps)	Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps)	Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide.
1	human	541578	CXorf40B	chromosome X open reading f...	NM_001013845.2	100%	100%
2	human	541578	CXorf40B	chromosome X open reading f...	XM_005274698.2	100%	100%
3	human	541578	CXorf40B	chromosome X open reading f...	XM_005274699.2	100%	100%
4	human	541578	CXorf40B	chromosome X open reading f...	XM_005274700.2	100%	100%
5	human	541578	CXorf40B	chromosome X open reading f...	XM_005274701.3	100%	100%
6	human	541578	CXorf40B	chromosome X open reading f...	XM_005274702.3	100%	100%
7	human	541578	CXorf40B	chromosome X open reading f...	XM_006724826.3	100%	100%
8	human	541578	CXorf40B	chromosome X open reading f...	XM_011531180.2	100%	100%
9	human	541578	CXorf40B	chromosome X open reading f...	XM_017029585.2	100%	100%
10	human	541578	CXorf40B	chromosome X open reading f...	XM_017029586.2	100%	100%
11	human	541578	CXorf40B	chromosome X open reading f...	XM_017029588.2	100%	100%
12	human	541578	CXorf40B	chromosome X open reading f...	XM_017029589.1	100%	100%
13	human	91966	CXorf40A	chromosome X open reading f...	NM_001171907.3	99.3%	98.7%	87C>T;159G>T;335T>C
14	human	91966	CXorf40A	chromosome X open reading f...	NM_001171908.3	99.3%	98.7%	87C>T;159G>T;335T>C
15	human	91966	CXorf40A	chromosome X open reading f...	NM_001324274.2	99.3%	98.7%	87C>T;159G>T;335T>C
16	human	91966	CXorf40A	chromosome X open reading f...	NM_001324275.2	99.3%	98.7%	87C>T;159G>T;335T>C
17	human	91966	CXorf40A	chromosome X open reading f...	NM_001324277.2	99.3%	98.7%	87C>T;159G>T;335T>C
18	human	91966	CXorf40A	chromosome X open reading f...	NM_001324278.2	99.3%	98.7%	87C>T;159G>T;335T>C
19	human	91966	CXorf40A	chromosome X open reading f...	NM_001324280.2	99.3%	98.7%	87C>T;159G>T;335T>C
20	human	91966	CXorf40A	chromosome X open reading f...	NM_178124.6	99.3%	98.7%	87C>T;159G>T;335T>C
21	human	91966	CXorf40A	chromosome X open reading f...	XM_005262349.4	99.3%	98.7%	87C>T;159G>T;335T>C
22	human	541578	CXorf40B	chromosome X open reading f...	XM_011531181.3	91.9%	91.1%	433_433delAinsGTAGAC;438_438delAins32
23	human	541578	CXorf40B	chromosome X open reading f...	XM_017029590.2	91.9%	91.1%	433_433delAinsGTAGAC;438_438delAins32
24	human	541578	CXorf40B	chromosome X open reading f...	XM_017029591.2	91.9%	91.1%	433_433delAinsGTAGAC;438_438delAins32
25	human	541578	CXorf40B	chromosome X open reading f...	XM_017029592.2	91.9%	91.1%	433_433delAinsGTAGAC;438_438delAins32
26	human	541578	CXorf40B	chromosome X open reading f...	XM_017029593.2	91.9%	91.1%	433_433delAinsGTAGAC;438_438delAins32
27	human	541578	CXorf40B	chromosome X open reading f...	XM_024452391.1	91.9%	91.1%	433_433delAinsGTAGAC;438_438delAins32
28	human	91966	CXorf40A	chromosome X open reading f...	NM_001171909.3	91.3%	89.8%	(many diffs)
29	human	91966	CXorf40A	chromosome X open reading f...	NM_001324276.2	91.3%	89.8%	(many diffs)
30	human	91966	CXorf40A	chromosome X open reading f...	NM_001324279.2	91.3%	89.8%	(many diffs)
31	human	91966	CXorf40A	chromosome X open reading f...	XM_024452480.1	91.3%	89.8%	(many diffs)

Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:: 66
ORF end:: 540
ORF length:: 474
Sequence:: 1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag

61 ttggcatgaa gtttggctgc ctctccttcc ggcagcctta tgctggcttt gtcttaaatg

121 gaatcaagac tgtggagacg cgctggcgtc ctctgctgag cagccagcgg aactgtacca

181 tcgccgtcca cattgctcac agggactggg aaggcgatgc ctgtcgggag ctgctggtgg

241 agagactcgg gatgactcct gctcagattc aggccttgct caggaaaggg gaaaagtttg

301 gtcgaggagt gatagcggga ctcgttgaca ttggggaaac tttgcaatgc cccgaagact

361 taactcccga tgaggttgtg gaactagaaa atcaagctgc actgaccaac ctgaagcaga

421 agtacctgac tgtgatttca aaccccaggt ggttactgga gcccatacct aggaaaggag

481 gcaaggatgt attccaggta gacatcccag agcacctgat ccctttgggg catgaagtgt

541 gcccaacttt cttgtacaaa gtggttggta agcctatccc taaccctctc ctcggtctcg

601 attctacgta gtaatgagct agcgctaacc ggtggcgcgt taagtcgaca atcaacctct

661 ggatta

Download FASTA (ORF) (Full)

1	ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61	ttggcatgaa gtttggctgc ctctccttcc ggcagcctta tgctggcttt gtcttaaatg
121	gaatcaagac tgtggagacg cgctggcgtc ctctgctgag cagccagcgg aactgtacca
181	tcgccgtcca cattgctcac agggactggg aaggcgatgc ctgtcgggag ctgctggtgg
241	agagactcgg gatgactcct gctcagattc aggccttgct caggaaaggg gaaaagtttg
301	gtcgaggagt gatagcggga ctcgttgaca ttggggaaac tttgcaatgc cccgaagact
361	taactcccga tgaggttgtg gaactagaaa atcaagctgc actgaccaac ctgaagcaga
421	agtacctgac tgtgatttca aaccccaggt ggttactgga gcccatacct aggaaaggag
481	gcaaggatgt attccaggta gacatcccag agcacctgat ccctttgggg catgaagtgt
541	gcccaacttt cttgtacaaa gtggttggta agcctatccc taaccctctc ctcggtctcg
601	attctacgta gtaatgagct agcgctaacc ggtggcgcgt taagtcgaca atcaacctct
661	ggatta