Construct: ORF ccsbBroad304_06373

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000421.1_s304c1, BRDN0000409169
Derived from:
ccsbBroadEn_06373
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
HLA-DQB1 (3119)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_06373
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 3119 HLA-DQB1 major histocompatibility co... NM_001243962.1 95.7% 92.7% (many diffs)
2 human 3119 HLA-DQB1 major histocompatibility co... NM_002123.5 94.7% 91.5% (many diffs)
3 human 3119 HLA-DQB1 major histocompatibility co... NM_001243961.2 91.9% 88.8% (many diffs)
4 human 3120 HLA-DQB2 major histocompatibility co... XM_011514560.2 88.6% 80.8% (many diffs)
5 human 3120 HLA-DQB2 major histocompatibility co... NM_001300790.2 86% 78.4% (many diffs)
6 human 3120 HLA-DQB2 major histocompatibility co... XM_005249051.4 82.4% 74.2% (many diffs)
7 human 3120 HLA-DQB2 major histocompatibility co... NM_001198858.2 77.5% 67.8% (many diffs)
8 human 3120 HLA-DQB2 major histocompatibility co... XM_011514561.3 74.8% 66.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
849
ORF length:
783
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgtc ttggaagaag gctttgcgga tccctggagg ccttcgggta gcaactgtga
121ccttgatgct ggcgatgctg agcaccccgg tggctgaggg cagagactct cccgaggatt
181tcgtgtacca gtttaagggc atgtgctact tcaccaacgg gacggagcgc gtgcgtcttg
241tgaccagata catctataac cgagaggagt acgcacgctt cgacagcgac gtgggggtgt
301atcgggcggt gacgccgctg gggccgcctg ccgccgagta ctggaacagc cagaaggaag
361tcctggagag gacccgggcg gagttggaca cggtgtgcag acacaactac cagttggagc
421tccgcacgac cttgcagcgg cgagtggagc ccacagtgac catctcccca tccaggacag
481aggccctcaa ccaccacaac ctgctggtct gctcagtgac agatttctat ccagcccaga
541tcaaagtccg gtggtttcgg aatgaccagg aggagacaac tggcgttgtg tccacccccc
601ttattaggaa cggtgactgg accttccaga tcctggtgat gctggaaatg actccccagc
661gtggagacgt ctacacctgc cacgtggagc accccagcct ccagaacccc atcatcgtgg
721agtggcgggc tcagtctgaa tctgcccaga gcaagatgct gagtggcatt ggaggcttcg
781tgctggggct gatcttcctc gggctgggcc ttattatcca tcacaggagt cagaaagggc
841tcctgcactg cccaactttc ttgtacaaag tggttggtaa gcctatccct aaccctctcc
901tcggtctcga ttctacgtag taatgagcta gcgctaaccg gtggcgcgtt aagtcgacaa
961tcaacctctg gatta

Download FASTA (ORF) (Full)