Construct: ORF ccsbBroad304_06563

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016959.1_s304c1, BRDN0000462186
Derived from:
ccsbBroadEn_06563
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
MATN2 (4147)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_06563
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 4147 MATN2 matrilin 2 NM_030583.4 99.7% 99.8% (many diffs)
2 human 4147 MATN2 matrilin 2 NM_002380.5 97.7% 97.9% (many diffs)
3 human 4147 MATN2 matrilin 2 XM_017013417.2 95.4% 95.5% (many diffs)
4 human 4147 MATN2 matrilin 2 NM_001317748.2 93.5% 93.6% (many diffs)
5 human 4147 MATN2 matrilin 2 XM_017013418.2 85% 85% (many diffs)
6 human 4147 MATN2 matrilin 2 XM_005250920.2 83.3% 83.3% (many diffs)
7 mouse 17181 Matn2 matrilin 2 NM_016762.2 86.2% 87.3% (many diffs)
8 mouse 17181 Matn2 matrilin 2 XM_006520023.2 84.5% 85.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2877
ORF length:
2811
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgga aaagatgctc gcaggctgct ttctgctgat cctcggacag atcgtcctcc
121tccctgccga ggccagggag cggtcacgtg ggaggtccat ctctaggggc agacacgctc
181ggacccaccc gcagacggcc cttctggaga gttcctgtga gaacaagcgg gcagacctgg
241ttttcatcat tgacagctct cgcagtgtca acacccatga ctatgcaaag gtcaaggagt
301tcatcgtgga catcttgcaa ttcttggaca ttggtcctga tgtcacccga gtgggcctgc
361tccaatatgg cagcactgtc aagaatgagt tctccctcaa gaccttcaag aggaagtccg
421aggtggagcg tgctgtcaag aggatgcggc atctgtccac gggcaccatg accgggctgg
481ccatccagta tgccctgaac atcgcattct cagaagcaga gggggcccgg cccctgaggg
541agaatgtgcc acgggtcata atgatcgtga cagatgggag acctcaggac tccgtggccg
601aggtggctgc taaggcacgg gacacgggca tcctaatctt tgccattggt gtgggccagg
661tagacttcaa caccttgaag tccattggga gtgagcccca tgaggaccat gtcttccttg
721tggccaattt cagccagatt gagacgctga cctccgtgtt ccagaagaag ttgtgcacgg
781cccacatgtg cagcaccctg gagcataact gtgcccactt ctgcatcaac atccctggct
841catacgtctg caggtgcaaa caaggctaca ttctcaactc ggatcagacg acttgcagaa
901tccaggatct gtgtgccatg gaggaccaca actgtgagca gctctgtgtg aatgtgccgg
961gctccttcgt ctgccagtgc tacagtggct acgccctggc tgaggatggg aagaggtgtg
1021tggctgtgga ctactgtgcc tcagaaaacc acggatgtga acatgagtgt gtaaatgctg
1081atggctccta cctttgccag tgccatgaag gatttgctct taacccagat gaaaaaacgt
1141gcacaaagat agactactgt gcctcatcta atcatggatg tcagcatgag tgtgttaaca
1201cagatgattc ctattcctgc cactgcctga aaggctttac cctgaatcca gataagaaaa
1261cctgcagaag gatcaactac tgtgcactga acaaaccggg ctgtgagcat gagtgcgtca
1321acatggagga gagctactac tgccgctgcc accgtggcta cactctggac cccaatggca
1381aaacctgcag ccgagtggac cactgtgcac agcaggacca tggctgtgag cagctgtgtc
1441tgaacacgga ggattccttc gtctgccagt gctcagaagg cttcctcatc aacgaggacc
1501tcaagacctg ctcccgggtg gattactgcc tgctgagtga ccatggttgt gaatactcct
1561gtgtcaacat ggacagatcc tttgcctgtc agtgtcctga gggacacgtg ctccgcagcg
1621atgggaagac gtgtgcaaaa ttggactctt gtgctctggg ggaccacggt tgtgaacatt
1681cgtgtgtaag cagtgaagat tcgtttgtgt gccagtgctt tgaaggttat atactccgtg
1741aagatggaaa aacctgcaga aggaaagatg tctgccaagc tatagaccat ggctgtgaac
1801acatttgtgt gaacagtgac gactcataca cgtgcgagtg cttggaggga ttccggctcg
1861ctgaggatgg gaaacgctgc cgaaggaagg atgtctgcaa atcaacccac catggctgcg
1921aacacatttg tgttaataat gggaattcct acatctgcaa atgctcagag ggatttgttc
1981tagctgagga cggaagacgg tgcaagaaat gcactgaagg cccaattgac ctggtctttg
2041tgatcgatgg atccaagagt cttggagaag agaattttga ggtcgtgaag cagtttgtca
2101ctggaattat agattccttg acaatttccc ccaaagccgc tcgagtgggg ctgctccagt
2161attccacaca ggtccacaca gagttcaccc tgagaaactt caactcagcc aaagacatga
2221aaaaagccgt ggcccacatg aaatacatgg gaaagggctc tatgactggg ctggccctga
2281aacacatgtt tgagagaagt tttacccaag gagaaggggc caggcccctt tccacaaggg
2341tgcccagagc agccattgtg ttcaccgacg gacgggctca ggatgacgtc tccgagtggg
2401ccagtaaagc caaggccaat ggtatcacta tgtatgctgt tggggtagga aaagccattg
2461aggaggaact acaagagatt gcctctgagc ccacaaacaa gcatctcttc tatgccgaag
2521acttcagcac aatggatgag ataagtgaaa aactcaagaa aggcatctgt gaagctctag
2581aagactccga tggaagacag gactctccag caggggaact gccaaaaacg gtccaacagc
2641caacagtgca acacagatat ctgtttgaag aagacaatct tttacggtct acacaaaagc
2701tttcccattc aacaaaacct tcaggaagcc ctttggaaga aaaacacgat caatgcaaat
2761gtgaaaacct tataatgttc cagaaccttg caaacgaaga agtaagaaaa ttaacacagc
2821gcttagaaga aatgacacag agaatggaag ccctggaaaa tcgcctgaga tacagatgcc
2881caactttctt gtacaaagtg gttggtaagc ctatccctaa ccctctcctc ggtctcgatt
2941ctacgtagta atgagctagc gctaaccggt ggcgcgttaa gtcgacaatc aacctctgga
3001tta

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