Transcript: Human NM_002380.5

Homo sapiens matrilin 2 (MATN2), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-05-28
Taxon:
Homo sapiens (human)
Gene:
MATN2 (4147)
Length:
4133
CDS:
251..3121

Additional Resources:

NCBI RefSeq record:
NM_002380.5
NBCI Gene record:
MATN2 (4147)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_002380.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000372965 GCGACACATTTGTAGTCATTG pLKO_005 3134 3UTR 100% 10.800 15.120 N MATN2 n/a
2 TRCN0000372964 TCTGAGCCAGTCACCATAAAT pLKO_005 2834 CDS 100% 15.000 10.500 N MATN2 n/a
3 TRCN0000119478 GCCAATGGTATCACTATGTAT pLKO.1 2600 CDS 100% 5.625 3.938 N Matn2 n/a
4 TRCN0000053547 CCAAGGCCAATGGTATCACTA pLKO.1 2595 CDS 100% 4.950 3.465 N MATN2 n/a
5 TRCN0000053544 GCCATGAAGGATTTGCTCTTA pLKO.1 1287 CDS 100% 4.950 3.465 N MATN2 n/a
6 TRCN0000053543 CCACATGAAATACATGGGAAA pLKO.1 2419 CDS 100% 4.050 2.835 N MATN2 n/a
7 TRCN0000053546 CCAGGTAGACTTCAACACCTT pLKO.1 841 CDS 100% 2.640 1.848 N MATN2 n/a
8 TRCN0000053545 GCGAACACATTTGTGTTAATA pLKO.1 2103 CDS 100% 1.500 1.050 N MATN2 n/a
9 TRCN0000119479 GCAAAGGTCAAGGAGTTCATT pLKO.1 470 CDS 100% 5.625 3.938 N Matn2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_002380.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_06563 pDONR223 100% 97.7% 97.9% None (many diffs) n/a
2 ccsbBroad304_06563 pLX_304 0% 97.7% 97.9% V5 (many diffs) n/a
3 TRCN0000480262 TAGTCGCCTTTATCGTATGGGGTA pLX_317 13.4% 97.7% 97.9% V5 (many diffs) n/a
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