Construct: ORF ccsbBroad304_06636

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF017712.1_s304c1, BRDN0000402982
Derived from:
ccsbBroadEn_06636
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
NFIC (4782)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_06636
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 4782 NFIC nuclear factor I C NM_005597.4 99.9% 99.7% 1276T>G
2 human 4782 NFIC nuclear factor I C XM_017026836.2 97.6% 97.4% 0_1ins28;2delT;1249T>G
3 human 4782 NFIC nuclear factor I C NM_001245004.2 96.5% 96.3% 1270_1276delCCTACTC;1280_1311del;1317_1318insCTGGGA
4 human 4782 NFIC nuclear factor I C XM_017026835.2 96.5% 96.3% 1270_1276delCCTACTC;1280_1311del;1317_1318insCTGGGA
5 human 4782 NFIC nuclear factor I C NM_001245005.2 94.4% 94.1% (many diffs)
6 human 4782 NFIC nuclear factor I C NM_001245002.2 83.3% 83.4% (many diffs)
7 human 4782 NFIC nuclear factor I C XM_005259564.4 82.8% 82.9% (many diffs)
8 human 4782 NFIC nuclear factor I C NM_205843.3 81.5% 81.4% (many diffs)
9 human 4782 NFIC nuclear factor I C XM_017026834.2 75% 75% (many diffs)
10 human 4782 NFIC nuclear factor I C XM_006722759.2 73.3% 73.2% (many diffs)
11 mouse 18029 Nfic nuclear factor I/C NM_026756.2 89.3% 96.2% (many diffs)
12 mouse 18029 Nfic nuclear factor I/C NM_008688.3 86.9% 92.9% (many diffs)
13 mouse 18029 Nfic nuclear factor I/C XM_006513335.3 84.9% 90.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1350
ORF length:
1284
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgta ttcgtccccg ctctgcctca cccaggatga gttccacccg ttcatcgagg
121ccctgctgcc tcacgtccgc gccttcgcct acacctggtt caacctgcag gcgcggaagc
181gcaagtactt caagaagcac gagaagcgga tgtcgaagga cgaggagcgt gcggtcaagg
241acgagctgct gggcgagaag cccgaggtca agcagaagtg ggcgtcgcgg ctgctggcca
301agctgcgcaa ggacatccgg cccgagtgcc gcgaggactt cgtgctgagc atcaccggca
361agaaggcgcc gggctgcgtg ctctccaacc ccgaccagaa gggcaagatg cggcgcatcg
421actgtctccg gcaggcggac aaggtgtggc ggctggacct ggtcatggtc atcctgttca
481agggcatccc gctggagagc accgacggcg agcgcctggt caaggctgcg cagtgcggtc
541acccggtcct gtgcgtgcag ccgcaccaca ttggcgtggc cgtcaaggag ctggacctct
601acctggccta cttcgtgcgt gagcgagatg cagagcaaag cggcagtccc cggacaggga
661tgggctctga ccaggaggac agcaagccca tcacgctgga cacgaccgac ttccaggaga
721gctttgtcac ctccggcgtg ttcagcgtca ctgagctcat ccaagtgtcc cggacacccg
781tggtgactgg aacaggaccc aacttctccc tgggggagct gcaggggcac ctggcatacg
841acctgaaccc agccagcact ggcctcagaa gaacgctgcc cagcacctcc tccagtggga
901gcaagcggca caaatcgggc tcgatggagg aagacgtgga cacgagccct ggcggcgatt
961actacacttc gcccagctcg cccacgagta gcagccgcaa ctggacggag gacatggaag
1021gaggcatctc gtccccggtg aagaagacag agatggacaa gtcaccattc aacagcccgt
1081ccccccagga ctctccccgc ctctccagct tcacccagca ccaccggccc gtcatcgccg
1141tgcacagcgg gatcgcccgg agcccacacc cgtcctccgc tctgcatttc cctacgacgt
1201ccatcctacc ccagacggcc tccacctact tcccccacac ggccatccgc tacccacctc
1261atctcaaccc ccaggacccg ctcaaagatc ttgtctcgct ggcctgcgac ccagccagcc
1321agcaacctgg accgtcctgg gatctgggat acccaacttt cttgtacaaa gtggttggta
1381agcctatccc taaccctctc ctcggtctcg attctacgta gtaatgagct agcgctaacc
1441ggtggcgcgt taagtcgaca atcaacctct ggatta

Download FASTA (ORF) (Full)