Construct: ORF ccsbBroad304_06742

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007924.1_s304c1, BRDN0000400351
Derived from:
ccsbBroadEn_06742
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PML (5371)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_06742
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5371 PML promyelocytic leukemia NM_033250.3 99.8% 99.6% (many diffs)
2 human 5371 PML promyelocytic leukemia NM_033239.3 94% 93.8% (many diffs)
3 human 5371 PML promyelocytic leukemia NM_033249.2 72.1% 67.4% (many diffs)
4 human 5371 PML promyelocytic leukemia NM_033238.3 71.6% 62.1% (many diffs)
5 human 5371 PML promyelocytic leukemia NM_002675.3 68% 63.5% (many diffs)
6 human 5371 PML promyelocytic leukemia NM_033240.3 66.5% 63.8% (many diffs)
7 human 5371 PML promyelocytic leukemia NM_033244.4 61.1% 60.8% (many diffs)
8 human 5371 PML promyelocytic leukemia NM_033247.3 54.7% 53.3% (many diffs)
9 human 5371 PML promyelocytic leukemia NM_033246.2 53.6% 53.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2409
ORF length:
2343
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgga gcctgcaccc gcccgatctc cgaggcccca gcaggacccc gcccggcccc
121aggagcccac catgcctccc cccgagaccc cctctgaagg ccgccagccc agccccagcc
181ccagccctac agagcgagcc cccgcttcgg aggaggagtt ccagtttctg cgctgccagc
241aatgccaggc ggaagccaag tgcccgaagc tgctgccttg tctgcacacg ctgtgctcag
301gatgcctgga ggcgtcgggc atgcagtgcc ccatctgcca ggcgccctgg cccctaggtg
361cagacacacc cgccctggat aacgtctttt tcgagagtct gcagcggcgc ctgtcggtgt
421accggcagat tgtggatgcg caggctgtgt gcacccgctg caaagagtcg gccgacttct
481ggtgctttga gtgcgagcag ctcctctgcg ccaagtgctt cgaggcacac cagtggttcc
541tcaagcacga ggcccggccc ctagcagagc tgcgcaacca gtcggtgcgt gagttcctgg
601acggcacccg caagaccaac aacatcttct gctccaaccc caaccaccgc acccctacgc
661tgaccagcat ctactgccga ggatgttcca agccgctgtg ctgctcgtgc gcgctccttg
721acagcagcca cagtgatctc aagtgcgaca tcagcgcaga gatccagcag cgacaggagg
781agctggacgc catgacgcag gcgctgcagg agcaggatag tgcctttggc gcggttcacg
841cgcagatgca cgcggctgtc ggccagctgg gccgcgcgcg tgccgagacc gaggagctga
901tccgcgagcg cgtgcgccag gtggtagctc acgtgcgggc tcaggagcgc gagctgctgg
961aggctgtgga cgcgcggtac cagcgcgact acgaggagat ggccagtcgg ctgggccgcc
1021tggatgctgt gctgcagcgc atccgcacgg gcagcgcgct ggtgcagagg atgaagtgct
1081acgcctcgga ccaggaggtg ctggacatgc acggtttcct gcgccaggcg ctctgccgcc
1141tgcgccagga ggagccccag agcctgcaag ctgccgtgcg caccgatggc ttcgacgagt
1201tcaaggtgcg cctgcaggac ctcagctctt gcatcaccca ggggaaagat gcagctgtat
1261ccaagaaagc cagcccagag gctgccagca ctcccaggga ccctattgac gttgacctgg
1321atgtctccaa tacaacgaca gcccagaaga ggaagtgcag ccagacccag tgccccagga
1381aggtcatcaa gatggagtct gaggagggga aggaggcaag gttggctcgg agctccccgg
1441agcagcccag gcccagcacc tccaaggcag tctcaccacc ccacctggat ggaccgccta
1501gccccaggag ccccgtcata ggaagtgagg tcttcctgcc caacagcaac cacgtggcca
1561gtggcgccgg ggaggcagag gaacgcgttg tggtgatcag cagctcggaa gactcagatg
1621ccgaaaactc gtgcatggag cccatggaga ccgccgagcc acagtcctcg ccagcccact
1681cctcgccagc ccactcctcg ccagcccact cctcgccagt ccagtctctg ctgagagcac
1741aaggagcctc cagcctgccc tgtggcacat accacccccc agcttggcct ccccaccagc
1801ccgctgagca ggctgccacc cccgatgctg agcctcacag cgagcctcct gatcaccagg
1861agcgccctgc cgtccaccgt gggatccgct acctgttgta cagagcacag agagccatcc
1921gccttcgcca tgccctccgc ttgcaccctc aattgcatcg ggcccctatt cggacttggt
1981ctccccatgt ggtccaagcc agcactcctg ccatcacagg gcccctcaac catcctgcca
2041atgcccagga acatcctgcc cagctgcaaa ggggcatcag cccaccccac cggatacgag
2101gggctgtgcg atcccgcagc cgctccctcc ggggctcctc ccatttatcc cagtggctca
2161acaacttttt tgccctcccc ttctcctcca tggcttccca gcttgacatg tcttccgtgg
2221tgggggcagg ggaaggcaga gcccagactc ttggagcagt tgttccccct ggggactctg
2281tcagaggctc catggaggcc tctcaagtcc aagtgcctct ggaagcctct ccaattacat
2341tcccaccacc ctgtgcccca gaaaggcccc ccatcagccc agtcccaggc gcccgtcaag
2401caggcctctg cccaactttc ttgtacaaag tggttggtaa gcctatccct aaccctctcc
2461tcggtctcga ttctacgtag taatgagcta gcgctaaccg gtggcgcgtt aagtcgacaa
2521tcaacctctg gatta

Download FASTA (ORF) (Full)