Construct: ORF ccsbBroad304_07138
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001071.1_s304c1, BRDN0000460472
- Derived from:
- ccsbBroadEn_07138
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- XG (7499)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_07138
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 7499 | XG | Xg glycoprotein (Xg blood g... | NM_001141919.1 | 99.8% | 99.4% | 392T>C |
| 2 | human | 7499 | XG | Xg glycoprotein (Xg blood g... | XM_005274587.4 | 99.3% | 98.9% | 254_256delGTA;395T>C |
| 3 | human | 7499 | XG | Xg glycoprotein (Xg blood g... | NM_175569.2 | 92.3% | 92.3% | 372_373ins45 |
| 4 | human | 7499 | XG | Xg glycoprotein (Xg blood g... | XM_017029787.2 | 92.1% | 91.8% | 60_61ins42;212_214delGTA;353T>C |
| 5 | human | 7499 | XG | Xg glycoprotein (Xg blood g... | NM_001141920.1 | 91.8% | 91.8% | 254_256delGTA;375_376ins45 |
| 6 | human | 7499 | XG | Xg glycoprotein (Xg blood g... | XM_011545575.3 | 64.7% | 63.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 654
- ORF length:
- 585
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcaccat ggagagctgg tggggacttc cctgtcttgc gttcctgtgt tttctaatgc 121 acgcccgagg tcaaagagac tttgatttgg cagatgccct tgatgaccct gaacccacca 181 agaagccaaa ctcagatatc tacccaaagc caaaaccacc ttactaccca cagcccgaga 241 atcccgacag cggtggaaat atctacccaa ggccaaagcc acgccctcaa ccccagcctg 301 gcaattccgg caacagtgga ggttacttca atgatgtgga ccgtgatgac ggacgctacc 361 cgcccaggcc caggccacgg ccgcctgcag gaggtggcgg cggtggctac tccagttatg 421 gcaactccga caacacgcac ggaagagggg gctatagacc caactctcgt tatggaaata 481 cttatggtgg agatcaccat tcaacgtatg gcaatccaga aggcaatatg gtagcaaaaa 541 tcgtgtctcc catcgtatcc gtggtggtgg tgacactgct gggagcagca gccagttatt 601 tcaaactaaa caataggaga aattgtttca ggacccatga accagaaaat gtcttgccaa 661 ctttcttgta caaagtggtt ggtaagccta tccctaaccc tctcctcggt ctcgattcta 721 cgtagtaatg agctagcgct aaccggtggc gcgttaagtc gacaatcaac ctctggatta