Construct: ORF ccsbBroad304_07172
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014854.1_s304c1, BRDN0000408684
- Derived from:
- ccsbBroadEn_07172
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF195 (7748)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_07172
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 7748 | ZNF195 | zinc finger protein 195 | NM_001130519.3 | 99.9% | 100% | 126C>T |
| 2 | human | 7748 | ZNF195 | zinc finger protein 195 | NM_001242841.2 | 99.1% | 99.1% | 1_13del;14_15insT;138C>T |
| 3 | human | 7748 | ZNF195 | zinc finger protein 195 | NM_001130520.3 | 96.2% | 96.3% | 126C>T;373_441del |
| 4 | human | 7748 | ZNF195 | zinc finger protein 195 | NM_001256824.2 | 96.2% | 96.2% | (many diffs) |
| 5 | human | 7748 | ZNF195 | zinc finger protein 195 | NM_001242842.2 | 93.1% | 90.6% | (many diffs) |
| 6 | human | 7748 | ZNF195 | zinc finger protein 195 | NM_007152.5 | 91.8% | 91.9% | 126C>T;225_226ins147 |
| 7 | human | 7748 | ZNF195 | zinc finger protein 195 | NM_001242843.2 | 91.1% | 91.1% | (many diffs) |
| 8 | human | 7748 | ZNF195 | zinc finger protein 195 | NM_001256825.1 | 91.1% | 91.1% | (many diffs) |
| 9 | human | 7748 | ZNF195 | zinc finger protein 195 | NR_046381.2 | 55.7% | (many diffs) | |
| 10 | human | 7748 | ZNF195 | zinc finger protein 195 | NR_046382.2 | 50.4% | (many diffs) | |
| 11 | human | 7748 | ZNF195 | zinc finger protein 195 | NR_040083.2 | 47.9% | (many diffs) | |
| 12 | human | 7748 | ZNF195 | zinc finger protein 195 | NM_001256823.2 | 12.8% | 12.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1887
- ORF length:
- 1818
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcaccat gactctgttg acgttcaggg atgtggccat agaattctcc ctggaggagt 121 ggaaatgcct ggacctcgct cagcagaatt tgtacaggga tgtgatgttg gagaactaca 181 gaaacttgtt ctctgttggt ctcactgtct gtaagccagg cctgatcacc tgcctggagc 241 aacgaaaaga gccctggaat gtgaagagac aggaggcagc agacggacat ccagagatgg 301 gatttcacca tgctactcag gcttgtcttg aactcctggg ctcaagcgat ctgcctgcct 361 cagcctccca aagtgctggg attacaggtg tgaaccaccg tgcccagcca ggcctcaatg 421 tttctgtgga caaattcact gctatgtctt ctcattttac ccaagacctt ctgccagagc 481 agggcataca agatgcattc ccaaaaagaa tactgagagg atatggaaat tgtggccttg 541 ataatttata tttaaggaaa gactgggaaa gtttagatga gtgtaagttg caaaaagatt 601 ataatggact taaccaatgt tcatcaacta cccatagcaa aatctttcaa tataataaat 661 atgttaaaat ctttgataac ttttcaaatt tacatagacg taatataagt aatactggag 721 agaaaccttt caaatgtcaa gaatgtggca aatcctttca aatgctctca ttcctaactg 781 aacatcagaa aattcacact ggaaaaaaat tccaaaaatg tggagaatgt ggcaaaacct 841 ttatccagtg ctcacacttt actgaacctg agaacattga cactggagag aaaccttaca 901 agtgtcaaga atgtaacaac gtcattaaaa cttgctcagt ccttactaaa aatagaattt 961 atgccggagg ggaacattac agatgtgaag aatttggcaa agtatttaac cagtgctccc 1021 accttactga acatgagcat ggtactgagg aaaaaccctg caaatatgaa gagtgcagca 1081 gtgtctttat ctcttgctca agcctttcta atcaacagat gattcttgct ggagagaagc 1141 tctccaaatg tgaaacatgg tacaaaggtt ttaaccacag cccaaatcct tccaaacacc 1201 agagaaatga gattggaggg aaacctttca aatgtgagga atgtgacagc atcttcaagt 1261 ggttctcaga ccttactaaa cataagagaa ttcacactgg tgagaaacca tacaaatgtg 1321 acgaatgtgg gaaagcctat acacagtcct cacacctcag tgaacacagg aggattcaca 1381 ccggagagaa accctaccaa tgtgaagaat gtgggaaggt cttcagaact tgctcaagcc 1441 tttctaacca taagagaact cattctgaag aaaaacccta cacgtgtgaa gaatgtggca 1501 acatctttaa gcagttatca gacctcacta agcataagaa aacccatact ggagagaagc 1561 cctacaaatg tgacgaatgt ggaaaaaact ttacccagtc ctccaacctt attgtacata 1621 agagaattca tactggagag aaaccctaca agtgtgaaga atgtggcaga gtcttcatgt 1681 ggttctcaga cattaccaaa cataagaaaa cccatactgg agagaaaccc tacaaatgtg 1741 acgaatgtgg aaaaaacttt acccagtcct caaaccttat tgtacataag agaattcata 1801 ctggagagaa accctacaag tgtgaaaagt gtggcaaagc cttcacccag ttctcacacc 1861 tgactgtaca tgaaagcatt catactttgc caactttctt gtacaaagtg gttggtaagc 1921 ctatccctaa ccctctcctc ggtctcgatt ctacgtagta atgagctagc gctaaccggt 1981 ggcgcgttaa gtcgacaatc aacctctgga tta