Construct: ORF ccsbBroad304_07188
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF003194.1_s304c1, BRDN0000406813
- Derived from:
- ccsbBroadEn_07188
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ABHD16A (7920)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_07188
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 7920 | ABHD16A | abhydrolase domain containi... | NM_021160.3 | 99.8% | 100% | 661C>T;1026A>G |
| 2 | human | 7920 | ABHD16A | abhydrolase domain containi... | NM_001177515.2 | 86.8% | 86.4% | (many diffs) |
| 3 | human | 7920 | ABHD16A | abhydrolase domain containi... | NR_033489.2 | 78.3% | (many diffs) | |
| 4 | human | 7920 | ABHD16A | abhydrolase domain containi... | NR_033488.2 | 74.9% | (many diffs) | |
| 5 | mouse | 193742 | Abhd16a | abhydrolase domain containi... | NM_178592.3 | 90.6% | 96% | (many diffs) |
| 6 | mouse | 193742 | Abhd16a | abhydrolase domain containi... | XM_017317351.1 | 86.5% | 91.7% | (many diffs) |
| 7 | mouse | 193742 | Abhd16a | abhydrolase domain containi... | XR_001782059.1 | 74.8% | (many diffs) | |
| 8 | mouse | 193742 | Abhd16a | abhydrolase domain containi... | XR_385303.3 | 73.7% | (many diffs) | |
| 9 | mouse | 193742 | Abhd16a | abhydrolase domain containi... | XM_017317352.1 | 69.2% | 73.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1740
- ORF length:
- 1674
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatggc gaagctgctg agctgcgtcc taggcccccg gctctacaaa atctaccggg 121 agagggactc tgaaagggcc ccggccagcg tccctgagac gccaacggca gtcactgccc 181 cccattccag ctcctgggat acgtactatc agccccgtgc cctggagaaa catgctgaca 241 gcatcctggc actggcttca gtattctggt ccatctctta ttactcctct cccttcgcct 301 tcttctactt gtacaggaaa ggttacttga gtttgtccaa agtggtgccg ttttctcact 361 atgctgggac attgctgcta cttctggcag gtgtggcctg cctccgaggc attggccgct 421 ggaccaaccc ccagtaccgg cagttcatca ccatcttgga agcaacacat cggaaccagt 481 cttcagaaaa caagaggcag cttgccaact acaactttga cttccggagc tggccagtcg 541 acttccactg ggaagaaccc agcagccgga aggagtctcg agggggccct tcccgccggg 601 gtgtggccct gcttcgccca gagcccctgc accgggggac agcagacacc ctcctcaacc 661 gggttaagaa gctgccttgt cagatcacca gctacctggt ggcgcacacc ctagggcgcc 721 ggatgttgta tccaggctct gtgtacctgc tgcagaaggc cctcatgcct gtgctgctgc 781 agggccaggc ccgactggtg gaagagtgta atgggcgccg ggcaaagctg ctggcctgtg 841 atggcaatga gattgacacc atgtttgtgg accggcgggg gacagctgag ccccagggac 901 agaagctggt gatctgctgt gaggggaatg ctgggtttta tgaggtgggc tgcgtctcca 961 cgcccctgga agctggatat tcagtcctgg gctggaatca tccaggcttt gctggaagca 1021 cgggggtgcc attcccgcag aatgaggcta atgccatgga tgtggtggtc cagtttgcca 1081 tccaccgcct gggcttccag ccccaggaca tcatcatcta cgcctggtcc atcggcggct 1141 tcactgccac gtgggcagcc atgtcctacc cagatgttag tgccatgatc ctggatgcct 1201 cctttgatga cctggtgccc ttggccttga aggtcatgcc agacagctgg aggggcctgg 1261 tgaccaggac cgtgaggcag catctcaatc taaacaacgc ggagcagctg tgcagatacc 1321 agggtcctgt actgctgatc cggagaacca aggatgagat catcaccacc acggttcctg 1381 aggacatcat gtccaaccga ggcaatgacc tcctgctgaa gctcctgcag catcggtatc 1441 cccgggtgat ggcagaggag ggtcttcgag tggtgaggca gtggttggag gcctcctcac 1501 agctggagga agcctcaatt tatagccgat gggaggtgga agaggactgg tgtctgtctg 1561 tcctccgctc ctaccaggca gaacacgggc ccgacttccc ctggagcgtg ggggaggaca 1621 tgagtgcaga tggacggcgg cagctggctt tgtttctggc tcggaagcat ctgcacaact 1681 ttgaggccac tcactgcacc ccactcccag cccagaactt ccagatgccc tggcacctct 1741 acccaacttt cttgtacaaa gtggttggta agcctatccc taaccctctc ctcggtctcg 1801 attctacgta gtaatgagct agcgctaacc ggtggcgcgt taagtcgaca atcaacctct 1861 ggatta