Construct: ORF ccsbBroad304_07305
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017939.1_s304c1, BRDN0000403848
- Derived from:
- ccsbBroadEn_07305
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SCEL (8796)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_07305
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 8796 | SCEL | sciellin | NM_003843.4 | 99.8% | 99.7% | (many diffs) |
| 2 | human | 8796 | SCEL | sciellin | NM_144777.3 | 96.8% | 96.6% | (many diffs) |
| 3 | human | 8796 | SCEL | sciellin | XM_006719885.1 | 96.8% | 96.7% | (many diffs) |
| 4 | human | 8796 | SCEL | sciellin | XM_011535281.1 | 96.7% | 96.5% | (many diffs) |
| 5 | human | 8796 | SCEL | sciellin | XM_011535282.1 | 96.7% | 96.5% | (many diffs) |
| 6 | human | 8796 | SCEL | sciellin | XM_011535283.1 | 96.7% | 96.5% | (many diffs) |
| 7 | human | 8796 | SCEL | sciellin | XM_011535289.1 | 96.6% | 96.5% | (many diffs) |
| 8 | human | 8796 | SCEL | sciellin | XM_011535284.1 | 96.6% | 96.3% | (many diffs) |
| 9 | human | 8796 | SCEL | sciellin | XM_011535285.2 | 95% | 94.9% | (many diffs) |
| 10 | human | 8796 | SCEL | sciellin | XM_006719882.1 | 93.9% | 95.6% | (many diffs) |
| 11 | human | 8796 | SCEL | sciellin | XM_011535286.1 | 93.9% | 93.7% | (many diffs) |
| 12 | human | 8796 | SCEL | sciellin | XM_011535287.1 | 93.8% | 93.6% | (many diffs) |
| 13 | human | 8796 | SCEL | sciellin | XM_006719884.1 | 93.7% | 93.4% | (many diffs) |
| 14 | human | 8796 | SCEL | sciellin | XM_005266578.1 | 93.5% | 93.3% | (many diffs) |
| 15 | human | 8796 | SCEL | sciellin | XM_011535288.1 | 91.7% | 91.5% | (many diffs) |
| 16 | human | 8796 | SCEL | sciellin | NM_001160706.1 | 90.8% | 90.5% | (many diffs) |
| 17 | human | 8796 | SCEL | sciellin | XM_011535290.1 | 88.3% | 88% | (many diffs) |
| 18 | human | 8796 | SCEL | sciellin | XM_017020805.1 | 88.1% | 87.9% | (many diffs) |
| 19 | human | 8796 | SCEL | sciellin | XM_011535291.1 | 82.8% | 82.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2070
- ORF length:
- 2004
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgtc caatgttacc ttgagaaaaa tgtctcccac aggaaatgag atgaagagca 121 ccactcaggg aaccacacgg aagcagcagg attttcacga ggtgaacaaa agaagaactt 181 tcttacagga taacagttgg ataaagaaac gccctgaaga agaaaaagat gaaaattacg 241 gtagggtggt gctcaaccga cataattccc atgatgcatt ggacaggaaa gtaaatgaga 301 gagatgtgcc aaaagctaca attagtcggt acagttctga tgacactttg gacaggatct 361 cagacagaaa tgatgctgct aaaacatata aggccaatac cttggataac caactaacca 421 ataggagcat gtccgtgttt agatcactgg aagtaacaaa gttgcaacct ggcggttcat 481 tgaatgccaa cacctccaac accatagcat ccacttctgc tactactcct gtaaagaaga 541 agaggcagtc ctggtttcca ccgccccctc caggttacaa tgcctcttcg agcacaggaa 601 ccaggagacg ggaaccaggt gttcaccctc caatacctcc aaagcccagt tctcctgttt 661 cttctactaa ccagctgaga caggataata ggcagataca tccacctaaa ccaggtgtat 721 atacagaaac caacagatct gctgaaagaa atataagtga agaattggat aatctcatca 781 aaatgaacaa aagcttgaat aggaatcaag gtcttgatag tctcttcaga gcaaatccaa 841 aggtagaaga aagagagaaa agagccaaaa gccttgaaag tctcatctat atgagtaccc 901 ggacagataa agatggcaaa ggaatccaaa gccttggaag tccgattaaa gttaatcaaa 961 ggactgacaa aaatgagaaa ggaagacaaa atctcgaatc tgttgctaaa gtgaatgcca 1021 ggatgaataa aacgagcaga agaagtgaag accttgataa tgctactgaa gtaaatccca 1081 aaggacatga aaataccact ggaaaaaaag accttgatgg gcttattaaa gtggatcctg 1141 aaacaaataa aaatattacg aggggccaga gccttgataa tctcatcaaa gtgacccctg 1201 aagtaaagag aagtaaccaa ggttccaaag accttaataa cttcatcaaa gtgtatccag 1261 gaacagaaaa aagtactgaa gggggccaaa gtctcgacag cctcattaaa gtgactcctg 1321 aaagaaacag aactaaccaa gggaaccaag acttggaaaa tcttatcaaa gtgatccctt 1381 cagcaaacaa aagcagtgaa caaggtcttg atgaacatat taatgtcagc cccaaagctg 1441 tcaaaaacac tgatggaaaa caagatcttg ataaactcat caaggtgaat cctgaaattt 1501 tcacaaacaa ccaaagaaac caagatcttg ctaacctcat caaagtaaat cctgcagtaa 1561 tcagaaacaa tcagagccaa gacttggaca atcttattaa agtgaaacct tcagctctta 1621 gaaacactaa tcgagaccag aacctggaaa atttaattga agtaaattct catgtgtctg 1681 aaaacaagaa tggaagctct aacactggag caaagcaggc aggaccacag gatactgttg 1741 tgtacacaag gacatatgtg gagaatagta aatcacccaa ggatggatat caggagaata 1801 tctctggaaa atacatacaa actgtttatt caacttctga taggtctgtc attgaaagag 1861 atatgtgcac ttactgccga aaacccttgg gtgtagaaac taaaatgatt ttagatgaat 1921 tacaaatttg ctgccattct acttgcttta agtgtgaaat atgcaagcag cctttggaaa 1981 atctacaagc gggtgatagt atttggattt atagacagac aatacactgt gaaccttgct 2041 actctaaaat tatggcaaag tggattccat acccaacttt cttgtacaaa gtggttggta 2101 agcctatccc taaccctctc ctcggtctcg attctacgta gtaatgagct agcgctaacc 2161 ggtggcgcgt taagtcgaca atcaacctct ggatta