Construct: ORF ccsbBroad304_07454

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000181.1_s304c1, BRDN0000403736
Derived from:
ccsbBroadEn_07454
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
NUP155 (9631)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_07454
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9631 NUP155 nucleoporin 155 NM_153485.3 99.9% 99.9% 9T>N;201G>A
2 human 9631 NUP155 nucleoporin 155 NM_004298.4 95.7% 95.7% 0_1ins177;24G>A
3 human 9631 NUP155 nucleoporin 155 NM_001278312.2 95.3% 95.3% 9T>N;201G>A;2433_2434ins192
4 human 9631 NUP155 nucleoporin 155 XR_001742368.2 79.7% (many diffs)
5 human 9631 NUP155 nucleoporin 155 XM_011514165.3 63.6% 62.9% (many diffs)
6 human 9631 NUP155 nucleoporin 155 XR_001742369.2 62.8% (many diffs)
7 mouse 170762 Nup155 nucleoporin 155 NM_133227.3 87.4% 94.8% (many diffs)
8 mouse 170762 Nup155 nucleoporin 155 XM_006519972.2 77.7% 83.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
4239
ORF length:
4173
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgcc gtcntctttg ttgggcgcgg cgatgccggc ctctacatct gccgcagccc
121tgcaggaagc tctggaaaat gctggacggc tcatcgaccg tcagttgcaa gaggaccgca
181tgtacccgga cctttccgag ctgcttatgg tgtctgcccc aaataatccc accgtttctg
241gcatgtcaga tatggattat cctttacaag gacctggttt gctgtccgta cccaaccttc
301cagagatcag ttccatccga agagttcctc tcccacctga acttgttgag cagtttggac
361atatgcagtg taattgcatg atgggtgtgt tccctcctat cagcagagct tggctcacaa
421ttgacagtga tatattcatg tggaactatg aggatggagg agaccttgcc tattttgatg
481gacttagtga gactattctt gctgtggggc ttgtgaagcc aaaagcaggc atctttcaac
541ctcatgtgcg acacctcctg gttttggcga cccctgtaga catagtaatt cttggactca
601gctatgctaa tttgcaaaca ggttctggag ttcttaatga tagtttgtct ggtggaatgc
661agttgcttcc agatccttta tattctcttc ctactgataa tacttacctt ttaacaataa
721cttccactga taatggcaga attttcttgg ctggaaagga tggctgttta tatgaagtag
781cctaccaggc tgaagcaggg tggtttagcc aaagatgtag gaaaataaac cactcaaaga
841gctcactttc tttccttgtt ccttccttgc tacaattcac gttctcagaa gatgatccta
901ttcttcaaat tgcaattgat aattctagaa atattttata tacacgatct gagaaaggag
961taatacaggt gtatgatttg ggacaagatg gacaaggaat gagcagagtt gcctctgtgt
1021cacagaatgc cattgtctct gctgctggta acattgctag gaccatcgat cgttctgttt
1081ttaaaccaat tgtccaaata gcagtgattg aaaattctga atcactggac tgtcagttat
1141tggctgtcac acatgcaggt gttaggttat attttagcac ttgtccattc agacagccat
1201tagcacggcc taatacactg acgctggttc atgtccgctt acctcctgga ttctcagcat
1261cttcaaccgt ggaaaagcct tcaaaagtac atagagctct ttatagtaaa ggtattctat
1321tgatggcagc ctcagaaaat gaggataatg atattttatg gtgtgtcaac catgatactt
1381ttcctttcca aaagccaatg atggaaaccc agatgacagc tggtgttgat ggtcattcct
1441gggctctttc tgcgatagat gaattgaaag tagataaaat aattacacct ttaaacaagg
1501atcatattcc aataactgat tcaccagttg ttgtacagca gcacatgtta cctccgaaga
1561aatttgttct cctctcagca caggggagcc ttatgtttca taaacttaga cctgtagatc
1621aactgaggca tctacttgtg agtaatgtgg gaggagatgg agaagagatt gaaagattct
1681ttaaattaca tcaggaagac caggcttgtg caacttgcct tattcttgct tgctccactg
1741ctgcctgtga tagagaagta tctgcctggg ctactcgggc tttctttagg tatggtggtg
1801aagcacagat gagatttcca accactcttc cgcctccaag taatgttggt cccatcttgg
1861ggtctcctgt ctattctagt tctcctgttc ctagtggtag tccctatcca aatccatcct
1921ttttgggaac accgtctcat ggtatacagc ctcctgccat gtcaactcca gtgtgtgctc
1981tgggaaaccc agcaactcag gccacaaata tgagttgtgt gactggacca gagattgtgt
2041actctggaaa acacaatggt atttgcattt acttttctcg gatcatggga aacatttggg
2101atgcaagctt agttgtggag agaatattca agagtggcaa cagagagatc actgcaattg
2161aaagtagtgt tccctgccaa ctgctagagt cagtgctaca agaactaaag ggtttgcagg
2221aatttctaga cagaaactcc cagtttgcag gaggaccatt aggaaatcca aatactactg
2281ctaaagtgca gcagaggctg ataggattca tgcgtcctga aaacggaaat ccccagcaaa
2341tgcaacagga actgcagagg aagtttcatg aggctcaact aagtgaaaag atttcacttc
2401aggcaattca gcagttggtt cgaaaatcat atcaggctct ggctttatgg aaacttcttt
2461gtgaacatca attcactatc attgtggcag aacttcagaa ggaacttcaa gagcagctga
2521agatcaccac ctttaaagat cttgtaatca gggacaaaga actcacaggg gcattaattg
2581cttctcttat caactgctac atcagagata atgccgctgt tgatggcatt agtttacatt
2641tacaggatat ctgcccactt ctatatagca ctgatgatgc aatttgttct aaggcaaatg
2701agcttctcca gcgttcccga caagttcaaa ataagactga aaaagaaaga atgttaaggg
2761aatcattaaa ggaatatcaa aaaattagca atcaagtgga cctttccaat gtttgtgctc
2821agtatagaca agtgagattt tatgagggtg tggtggaact ttctcttacg gctgcagaga
2881aaaaagatcc tcaaggtctt gggcttcatt tctataaaca tggagaacca gaagaagaca
2941tagttggact tcaggccttc caagaaagat taaacagtta caaatgcatt acagacacac
3001ttcaagaact ggtaaatcaa agtaaggccg ctcctcagtc tcccagtgta cccaaaaaac
3061ctggtcctcc agtgttgtca tctgatccaa atatgctgag taatgaagaa gcaggacatc
3121attttgaaca aatgcttaaa ttgtcacagc gatccaagga tgagctcttt agtattgccc
3181tttataattg gctaatacaa gtcgaccttg cagataagct gctacaggtt gcttctccat
3241ttctggagcc acatctagtc cgaatggcca aagttgatca aaacagagtt cgttatatgg
3301atttactctg gcggtattac gagaagaaca gaagtttcag taatgctgct cgtgtactgt
3361ccagactggc tgacatgcat agcacagaaa tttcacttca gcagcgacta gagtacattg
3421ctcgagccat tcttagtgcc aaaagttcca ctgccatttc atcaatagct gccgatggtg
3481aatttcttca tgaattagaa gaaaaaatgg aggttgctag gatccaactt cagatacagg
3541agacactaca aaggcagtat tcccatcatt cttctgtaca ggatgcagtt tctcagctgg
3601attctgagct gatggacata actaagcttt atggggaatt tgctgaccca tttaaacttg
3661cagagtgcaa acttgcaata attcattgtg ccggttattc agaccctata ttggtgcaga
3721cactttggca agatatcata gagaaagaat tgagtgacag tgtgacattg agctcctcgg
3781atagaatgca tgctcttagt ctcaagattg ttctccttgg caaaatttat gctggcacac
3841cacgcttctt tcctttagat tttattgtac agtttttaga acagcaggtt tgtactttga
3901actgggatgt gggcttcgta atacagacaa tgaatgaaat tggagtacca ttacctagac
3961tactagaagt ttatgatcag ttgttcaaat cacgggatcc attctggaac agaatgaaga
4021agccactgca ccttttggat tgtatacatg tattattgat aagatatgtt gagaatccca
4081gccaagtttt aaattgtgaa aggagaagat ttacaaatct ctgcctggat gctgtttgtg
4141gttaccttgt tgagctccag tctatgagct cgtcagtagc agtacaagcc atcactggga
4201attttaaatc tcttcaagct aaattagaac ggcttcatta cccaactttc ttgtacaaag
4261tggttggtaa gcctatccct aaccctctcc tcggtctcga ttctacgtag taatgagcta
4321gcgctaaccg gtggcgcgtt aagtcgacaa tcaacctctg gatta

Download FASTA (ORF) (Full)

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