Construct: ORF ccsbBroad304_07533

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003248.1_s304c1, BRDN0000401732
Derived from:
ccsbBroadEn_07533
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PDCD6 (10016)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_07533
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10016 PDCD6 programmed cell death 6 NM_013232.4 99.8% 99.4% 438T>N
2 human 10016 PDCD6 programmed cell death 6 NM_001267556.2 98.7% 98.4% 360_361insGGTTTC;432T>N
3 human 10016 PDCD6 programmed cell death 6 NM_001267557.1 64.2% 63.8% 161_162ins204;234T>N
4 human 10016 PDCD6 programmed cell death 6 NM_001267558.1 63.1% 62.8% 0_1ins210;228T>N
5 human 10016 PDCD6 programmed cell death 6 NM_001267559.2 36.1% 36.1% 207_208ins366
6 mouse 18570 Pdcd6 programmed cell death 6 NM_011051.3 86.7% 98.4% (many diffs)
7 mouse 18570 Pdcd6 programmed cell death 6 XM_006517156.1 85.8% 97.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
642
ORF length:
573
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat ggccgcctac tcttaccgcc ccggccctgg ggccggccct gggcctgctg
121caggcgcggc gctgccggac cagagcttcc tgtggaacgt tttccagagg gtcgataaag
181acaggagtgg agtgatatca gacaccgagc ttcagcaagc tctctccaac ggcacgtgga
241ctccctttaa tccagtgact gtcaggtcga tcatatccat gtttgaccgt gagaacaagg
301ccggcgtgaa cttcagcgag ttcacgggtg tgtggaagta catcacggac tggcagaacg
361tcttccgcac gtacgaccgg gacaactccg ggatgatcga taagaacgag ctgaagcagg
421ccctctcagg tttcggctac cggctctctg accagttcca cgacatcctc attcgaaagt
481ttgacaggca gggacggggg cagatngcct tcgacgactt catccagggc tgcatcgtcc
541tgcagaggtt gacggatata ttcagacgtt acgacacgga tcaggacggc tggattcagg
601tgtcgtacga acagtacctg tccatggtct tcagtatcgt attgccaact ttcttgtaca
661aagtggttgg taagcctatc cctaaccctc tcctcggtct cgattctacg tagtaatgag
721ctagcgctaa ccggtggcgc gttaagtcga caatcaacct ctggatta

Download FASTA (ORF) (Full)

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