Construct: ORF ccsbBroad304_07656
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011916.1_s304c1, BRDN0000404951
- Derived from:
- ccsbBroadEn_07656
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TRIM16 (10626)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_07656
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10626 | TRIM16 | tripartite motif containing 16 | NM_001348119.1 | 99.9% | 99.8% | 1682G>T |
| 2 | human | 10626 | TRIM16 | tripartite motif containing 16 | NM_001348120.1 | 99.9% | 99.8% | 1682G>T |
| 3 | human | 10626 | TRIM16 | tripartite motif containing 16 | NM_006470.4 | 99.9% | 99.8% | 1682G>T |
| 4 | human | 147166 | TRIM16L | tripartite motif containing... | NM_001353221.2 | 74.5% | 67.4% | (many diffs) |
| 5 | human | 10626 | TRIM16 | tripartite motif containing 16 | NM_001348121.1 | 73.5% | 68.1% | (many diffs) |
| 6 | human | 10626 | TRIM16 | tripartite motif containing 16 | NM_001348122.1 | 73.5% | 68.1% | (many diffs) |
| 7 | human | 10626 | TRIM16 | tripartite motif containing 16 | NM_001348126.1 | 70.4% | 69.2% | (many diffs) |
| 8 | human | 147166 | TRIM16L | tripartite motif containing... | NM_001353219.2 | 69.5% | 67.6% | (many diffs) |
| 9 | human | 147166 | TRIM16L | tripartite motif containing... | XM_011523689.3 | 68.8% | 67.5% | (many diffs) |
| 10 | human | 10626 | TRIM16 | tripartite motif containing 16 | NM_001348124.1 | 61.6% | 61.5% | 0_1ins648;1034G>T |
| 11 | human | 10626 | TRIM16 | tripartite motif containing 16 | NM_001348125.1 | 61.6% | 61.5% | 0_1ins648;1034G>T |
| 12 | human | 147166 | TRIM16L | tripartite motif containing... | NM_001037330.2 | 60.8% | 59.9% | (many diffs) |
| 13 | human | 147166 | TRIM16L | tripartite motif containing... | NM_001353220.2 | 60.8% | 59.9% | (many diffs) |
| 14 | human | 147166 | TRIM16L | tripartite motif containing... | NM_001353222.2 | 60.8% | 59.9% | (many diffs) |
| 15 | human | 147166 | TRIM16L | tripartite motif containing... | NM_001353223.2 | 60.8% | 59.9% | (many diffs) |
| 16 | human | 147166 | TRIM16L | tripartite motif containing... | NM_001353224.2 | 60.8% | 59.9% | (many diffs) |
| 17 | human | 147166 | TRIM16L | tripartite motif containing... | XM_011523690.2 | 60.8% | 59.9% | (many diffs) |
| 18 | human | 147166 | TRIM16L | tripartite motif containing... | XM_017024245.1 | 60.8% | 59.9% | (many diffs) |
| 19 | human | 147166 | TRIM16L | tripartite motif containing... | XM_017024246.1 | 60.8% | 59.9% | (many diffs) |
| 20 | human | 147166 | TRIM16L | tripartite motif containing... | XM_017024247.1 | 60.8% | 59.9% | (many diffs) |
| 21 | human | 147166 | TRIM16L | tripartite motif containing... | XM_017024248.1 | 60.8% | 59.9% | (many diffs) |
| 22 | human | 147166 | TRIM16L | tripartite motif containing... | XM_017024249.1 | 60.8% | 59.9% | (many diffs) |
| 23 | human | 147166 | TRIM16L | tripartite motif containing... | XM_017024250.1 | 60.8% | 59.9% | (many diffs) |
| 24 | human | 147166 | TRIM16L | tripartite motif containing... | XM_017024252.1 | 60.8% | 59.9% | (many diffs) |
| 25 | human | 147166 | TRIM16L | tripartite motif containing... | NM_001353225.2 | 30.1% | 15.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1758
- ORF length:
- 1692
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatggc tgagttggat ctaatggctc cagggccact gcccagggcc actgctcagc 121 ccccagcccc tctcagccca gactctgggt cacccagccc agattctggg tcagccagcc 181 cagtggaaga agaggacgtg ggctcctcgg agaagcttgg cagggagacg gaggaacagg 241 acagcgactc tgcagagcag ggggatcctg ctggtgaggg gaaagaggtc ctgtgtgact 301 tctgccttga tgacaccaga agagtgaagg cagtgaagtc ctgtctaacc tgcatggtga 361 attactgtga agagcacttg cagccgcatc aggtgaacat caaactgcaa agccacctgc 421 tgaccgagcc agtgaaggac cacaactggc gatactgccc tgcccaccac agcccactgt 481 ctgccttctg ctgccctgat cagcagtgca tctgccagga ctgttgccag gagcacagtg 541 gccacaccat agtctccctg gatgcagccc gcagggacaa ggaggctgaa ctccagtgca 601 cccagttaga cttggagcgg aaactcaagt tgaatgaaaa tgccatctcc aggctccagg 661 ctaaccaaaa gtctgttctg gtgtcggtgt cagaggtcaa agcggtggct gaaatgcagt 721 ttggggaact ccttgctgct gtgaggaagg cccaggccaa tgtgatgctc ttcttagagg 781 agaaggagca agctgcgctg agccaggcca acggtatcaa ggcccacctg gagtacagga 841 gtgccgagat ggagaagagc aagcaggagc tggagaggat ggcggccatc agcaacactg 901 tccagttctt ggaggagtac tgcaagttta agaacactga agacatcacc ttccctagtg 961 tttacgtagg gctgaaggat aaactctcgg gcatccgcaa agttatcacg gaatccactg 1021 tacacttaat ccagttgctg gagaactata agaaaaagct ccaggagttt tccaaggaag 1081 aggagtatga catcagaact caagtgtctg ccgttgttca gcgcaaatat tggacttcca 1141 aacctgagcc cagcaccagg gaacagttcc tccaatatgc gtatgacatc acgtttgacc 1201 cggacacagc acacaagtat ctccggctgc aggaggagaa ccgcaaggtc accaacacca 1261 cgccctggga gcatccctac ccggacctcc ccagcaggtt cctgcactgg cggcaggtgc 1321 tgtcccagca gagtctgtac ctgcacaggt actattttga ggtggagatc ttcggggcag 1381 gcacctatgt tggcctgacc tgcaaaggca tcgaccggaa aggggaggag cgcaacagtt 1441 gcatttccgg aaacaacttc tcctggagcc tccaatggaa cgggaaggag ttcacggcct 1501 ggtacagtga catggagacc ccactcaaag ctggcccttt ccggaggctc ggggtctata 1561 tcgacttccc gggagggatc ctttccttct atggcgtaga gtatgatacc atgactctgg 1621 ttcacaagtt tgcctgcaaa ttttcagaac cagtctatgc tgccttctgg ctttccaaga 1681 aggaaaacgc catccggatt gtagatctgg gagaggaacc cgagaagcca gcaccgtcct 1741 tggtggtgac tgctccctac ccaactttct tgtacaaagt ggttggtaag cctatcccta 1801 accctctcct cggtctcgat tctacgtagt aatgagctag cgctaaccgg tggcgcgtta 1861 agtcgacaat caacctctgg atta