Construct: ORF ccsbBroad304_08204
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014858.1_s304c1, BRDN0000461614
- Derived from:
- ccsbBroadEn_08204
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- WDPCP (51057)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_08204
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 51057 | WDPCP | WD repeat containing planar... | NM_001042692.3 | 99.9% | 99.8% | 1619G>A |
| 2 | human | 51057 | WDPCP | WD repeat containing planar... | NM_001354044.2 | 80.8% | 80.1% | (many diffs) |
| 3 | human | 51057 | WDPCP | WD repeat containing planar... | NM_015910.7 | 78.2% | 77.6% | (many diffs) |
| 4 | human | 51057 | WDPCP | WD repeat containing planar... | XM_011532881.3 | 71.1% | 70.3% | (many diffs) |
| 5 | human | 51057 | WDPCP | WD repeat containing planar... | XM_005264348.4 | 68.9% | 68.1% | (many diffs) |
| 6 | human | 51057 | WDPCP | WD repeat containing planar... | XM_011532884.3 | 64.9% | 63% | (many diffs) |
| 7 | human | 51057 | WDPCP | WD repeat containing planar... | XM_011532887.3 | 64% | 63.4% | (many diffs) |
| 8 | human | 51057 | WDPCP | WD repeat containing planar... | NM_001354045.2 | 61.9% | 57% | (many diffs) |
| 9 | human | 51057 | WDPCP | WD repeat containing planar... | XR_001738760.2 | 60.6% | (many diffs) | |
| 10 | human | 51057 | WDPCP | WD repeat containing planar... | XM_017004253.2 | 60.1% | 58.8% | (many diffs) |
| 11 | human | 51057 | WDPCP | WD repeat containing planar... | XM_017004254.2 | 59.7% | 58.9% | (many diffs) |
| 12 | human | 51057 | WDPCP | WD repeat containing planar... | XM_011532891.2 | 58.3% | 57.6% | (many diffs) |
| 13 | human | 51057 | WDPCP | WD repeat containing planar... | XM_011532890.3 | 56.5% | 55.7% | (many diffs) |
| 14 | human | 51057 | WDPCP | WD repeat containing planar... | XR_002959303.1 | 56.2% | (many diffs) | |
| 15 | human | 51057 | WDPCP | WD repeat containing planar... | XR_001738759.2 | 54.5% | (many diffs) | |
| 16 | human | 51057 | WDPCP | WD repeat containing planar... | NR_122106.2 | 40.3% | (many diffs) | |
| 17 | human | 51057 | WDPCP | WD repeat containing planar... | NR_148704.2 | 33.9% | (many diffs) | |
| 18 | human | 51057 | WDPCP | WD repeat containing planar... | XR_244934.3 | 33.9% | (many diffs) | |
| 19 | human | 51057 | WDPCP | WD repeat containing planar... | NR_148705.2 | 33.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1830
- ORF length:
- 1761
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcaccat gttttcgtct ctacattcag ctcttctcac agacagtttt atcatcttat 121 catttttggc acaaaacaaa ctatgtttta ttcagtttac caagaagatg gagtcttctg 181 atgtaaacaa aagactggaa aaactctcag ccttggatta taagattttc tattatgaaa 241 tacccggccc aataaacaag acaacagagc gacatctagc tatcaactgt gttcatgata 301 gagttgtttg ctggtggcca ctggtcaacg atgatgcttg gccttgggcc cccatttctt 361 ctgagaagga cagagccaat ctactcctcc tgggttatgc tcaaggaaga ctagaggttc 421 tgagttctgt ccgcacagaa tgggacccac tggatgttcg ctttggcacc aaacagcctt 481 atcaggtgtt cacagtggag cactccgtaa gtgtagacaa agagcccatg gctgacagct 541 gcatctatga atgcattcgg aataaaatcc agtgtgtgtc agtcaccaga ataccactaa 601 agtcaaaggc catcagctgc tgcaggaatg ttactgaaga caaactgatt ctgggctgtg 661 aagattcttc gctaattctt tatgaaactc accgtagagt gactctctta gcacagactg 721 aacttttgcc ttcattaata agctgccacc caagtggtgc cattctgcta gttggcagca 781 accaagggga gttgcaaatt tttgatatgg ctctatcccc tattaacatc caactgttgg 841 ctgaagaccg cttacccagg gagactctgc aattcagtaa attatttgat gcctccagca 901 gtcttgttca aatgcaatgg atagctcctc aggttgtttc tcagaagggt gaaggtagtg 961 atatctatga tctcctcttc ctcaggtttg aaagaggacc tttgggtgtg ctgttgttta 1021 aactaggcgt cttcactcga ggacagctgg gcctgataga catcatcttc cagtacattc 1081 actgtgatga gatctatgag gcaataaaca tcctgagcag catgaactgg gacactctgg 1141 gccaccagtg ctttatcagc atgagcgcca ttgtaaacca tcttcttaga cagaagctca 1201 ctccagagag agaagcacag cttgagacaa gccttggaac cttctatgct ccaacaagac 1261 cacttctgga ttccactata ttggaatata gagatcaaat cagcaaatat gcaaggagat 1321 tcttccatca cttgctcagg taccagaggt ttgaaaaggc atttctccta gctgttgacg 1381 ttggtgctcg tgacctcttt atggatattc attaccttgc actagataaa ggtgaattgg 1441 cactagctga agtggcaaga aaaagagcta gtgacattga tgcagaatca ataacctctg 1501 gggttgaact cctgggaccc ttggacagag gggatatgct aaatgaagca tttattggcc 1561 tgtctttagc acctcaagga gaagactcat ttccagataa cctccctccc tcttgcccaa 1621 cccacagaca tattttacaa caaagaatac tgaatggctc ttctaacaga caaataattg 1681 acagaaagaa tgaacttgaa aaagacatct gttctggatt tttgatgact aatacctgta 1741 atgcagaaga cggagaactg agagaagacg gcagagaaca ggaaatcaga gatggtggtt 1801 ctctcaaaat gattcacttt ggtctggtgt tgccaacttt cttgtacaaa gtggttggta 1861 agcctatccc taaccctctc ctcggtctcg attctacgta gtaatgagct agcgctaacc 1921 ggtggcgcgt taagtcgaca atcaacctct ggatta