Construct: ORF ccsbBroad304_08856

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007921.1_s304c1, BRDN0000407738
Derived from:
ccsbBroadEn_08856
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
DNAI2 (64446)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_08856
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 64446 DNAI2 dynein axonemal intermediat... NM_001172810.3 99.9% 99.8% 1636G>A
2 human 64446 DNAI2 dynein axonemal intermediat... XM_024450882.1 99.9% 99.8% 1636G>A
3 human 64446 DNAI2 dynein axonemal intermediat... NM_023036.6 97.9% 97.8% 1346_1381del;1672G>A
4 human 64446 DNAI2 dynein axonemal intermediat... XM_024450880.1 93% 92.9% 1636G>A;1687_1818del
5 human 64446 DNAI2 dynein axonemal intermediat... NM_001353167.2 91.3% 91.2% 1346_1381del;1672G>A;1723_1854del
6 human 64446 DNAI2 dynein axonemal intermediat... XM_011525125.2 91.3% 91.2% 1346_1381del;1672G>A;1723_1854del
7 human 64446 DNAI2 dynein axonemal intermediat... XM_024450874.1 91.3% 91.2% 1346_1381del;1672G>A;1723_1854del
8 human 64446 DNAI2 dynein axonemal intermediat... XM_024450875.1 91.3% 91.2% 1346_1381del;1672G>A;1723_1854del
9 human 64446 DNAI2 dynein axonemal intermediat... XM_024450876.1 91.3% 91.2% 1346_1381del;1672G>A;1723_1854del
10 human 64446 DNAI2 dynein axonemal intermediat... XM_024450877.1 91.3% 91.2% 1346_1381del;1672G>A;1723_1854del
11 human 64446 DNAI2 dynein axonemal intermediat... XM_024450878.1 91.3% 91.2% 1346_1381del;1672G>A;1723_1854del
12 human 64446 DNAI2 dynein axonemal intermediat... XM_024450879.1 89.8% 87.8% (many diffs)
13 human 64446 DNAI2 dynein axonemal intermediat... XM_024450883.1 88% 82.7% 1346_1381del;1567_1568ins155;1635_1636ins25
14 human 64446 DNAI2 dynein axonemal intermediat... XM_024450884.1 88% 82.7% 1346_1381del;1567_1568ins155;1635_1636ins25
15 human 64446 DNAI2 dynein axonemal intermediat... XM_024450881.1 85.4% 85.3% (many diffs)
16 human 64446 DNAI2 dynein axonemal intermediat... XM_024450885.1 69.2% 67.4% (many diffs)
17 human 64446 DNAI2 dynein axonemal intermediat... XM_024450886.1 69.2% 67.4% (many diffs)
18 human 64446 DNAI2 dynein axonemal intermediat... NR_148379.2 65.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1845
ORF length:
1779
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgga gattgtgtac gtgtacgtca agaagcgcag cgagttcggg aagcagtgca
121atttctcgga ccgccaggcc gagctgaaca tcgacatcat gcccaaccct gagctggccg
181agcagttcgt ggagcggaac ccagtggaca cgggcatcca gtgctcgatc agcatgtcgg
241aacacgaggc caactcagag cggtttgaga tggagacccg gggagttaac catgtcgagg
301ggggctggcc caaggacgtg aaccccctgg agctggagca gaccatccgt ttccggaaga
361aagtggagaa agatgagaac tacgttaacg ccatcatgca gctcggctct atcatggagc
421actgcatcaa gcagaacaat gccattgaca tctatgaaga gtatttcaat gacgaggagg
481ccatggaagt gatggaggag gacccttcag ctaaaaccat caatgtgttc agggaccccc
541aggaaatcaa gagggctgcc acacacctct cctggcaccc cgatggcaac aggaagttgg
601cagtggcata ctcctgcttg gattttcagc gggcacctgt gggcatgagc agcgattcat
661acatctggga cctggaaaac cccaacaagc ctgaacttgc tctgaagcca tcgtctccac
721tcgtgacgtt ggagttcaac cccaaagatt cccacgtact cctgggtggc tgctacaatg
781gacagatagc ctgctgggac acccgaaagg gcagcctggt ggcggagcta tccaccattg
841agtccagcca ccgagaccct gtgtatggca ccatctggct gcagtcgaag acgggcaccg
901agtgcttctc agcttccacg gatgggcagg tcatgtggtg ggacatccga aagatgagcg
961agcccactga agttgtgatc ttggacatca ccaagaagga acagttggaa aatgccttgg
1021gggccatctc cctggagttc gaatctactt tgcccaccaa gttcatggtg gggaccgagc
1081agggcatcgt catctcctgc aaccgcaagg ccaagacgtc agctgaaaag attgtgtgca
1141ccttcccggg ccatcatggc cccatctacg ccctccagag aaaccccttc tacccgaaga
1201acttcctgac ggttggcgac tggacagccc gcatttggtc tgaagacagc cgggaatcgt
1261ccatcatgtg gaccaagtac cacatggctt acctcactga tgctgcctgg agccccgtga
1321ggccgaccgt tttctttacc accaggatgg acggaaccct ggatatctgg gacttcatgt
1381tcgagcagtg cgatcccacc ctcagcttga aggacaatgg gtgtctcatc gcctgcggct
1441cccagctggg gacaaccacc ctgctggagg tctcgcctgg gctctctacc ctccagagga
1501atgagaagaa cgtagcctct tccatgtttg agcgtgagac ccggcgagag aagatcctgg
1561aggccaggca ccgggagatg cggctgaagg agaagggtaa ggcggagggc agggatgagg
1621agcagaccga tgaggagctg gccgtagacc tggaggcgct ggtcagcaag gccgaggagg
1681agttcttcga catcatcttc acagagctga agaagaagga ggcagacgcc ataaagctga
1741cgccagtgcc tcagcaacca agtccagaag aagaccaggt ggtggaggag ggagaggaag
1801cagcggggga agaaggggat gaagaagtgg aagaagactt agcctaccca actttcttgt
1861acaaagtggt tggtaagcct atccctaacc ctctcctcgg tctcgattct acgtagtaat
1921gagctagcgc taaccggtgg cgcgttaagt cgacaatcaa cctctggatt a

Download FASTA (ORF) (Full)

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