Construct: ORF ccsbBroad304_08926
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001900.1_s304c1, BRDN0000460933
- Derived from:
- ccsbBroadEn_08926
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- OR13A1 (79290)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_08926
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 79290 | OR13A1 | olfactory receptor family 1... | NM_001004297.3 | 99.8% | 100% | 150C>A |
| 2 | human | 79290 | OR13A1 | olfactory receptor family 1... | XM_011540147.3 | 99.8% | 100% | 150C>A |
| 3 | human | 79290 | OR13A1 | olfactory receptor family 1... | XM_017016632.2 | 99.8% | 100% | 150C>A |
| 4 | human | 79290 | OR13A1 | olfactory receptor family 1... | XM_017016633.2 | 99.8% | 100% | 150C>A |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1053
- ORF length:
- 984
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcaccat gaagctgtgg atggagagtc acctgatagt cccagaaacc cgtcccagcc 121 caaggatgat gagtaaccag acgttggtaa ccgagttcat cctgcagggc ttttcggagc 181 acccagaata ccgggtgttc ttattcagct gtttcctatt cctctactct ggggccctca 241 caggtaatgt cctcatcacc ttggccatca cgttcaaccc tgggctccac gctcctatgt 301 actttttctt actcaacttg gctactatgg acattatctg cacctcttcc atcatgccca 361 aggcgctggc cagtctggtg tcggaagaga gctccatctc ctacgggggc tgcatggccc 421 agctctattt cctcacgtgg gctgcatcct cagagctgct gctcctcacg gtcatggcct 481 atgaccggta cgcagccatc tgccacccgc tgcattacag cagcatgatg agcaaggtgt 541 tctgcagcgg gctggccaca gccgtgtggc tgctctgcgc cgtcaacacg gccatccaca 601 cggggctgat gctgcgcttg gatttctgtg gccccaatgt cattatccat ttcttctgcg 661 aggtccctcc cctgctgctt ctctcctgca gctccaccta cgtcaacggt gtcatgattg 721 tcctggcgga tgctttctac ggcatagtga acttcctgat gaccatcgcg tcctatggct 781 tcatcgtctc cagcatcctg aaggtgaaga ctgcctgggg gaggcagaaa gccttctcca 841 cctgctcttc ccacctcacc gtggtgtgca tgtattacac cgctgtcttc tacgcctaca 901 taagcccggt ctctggctac agcgcaggga agagcaagtt ggctggcctg ctgtacactg 961 tgctgagtcc taccctcaac cccctcatct atactttgag aaacaaggag gtcaaagcag 1021 ccctcaggaa gcttttccct ttcttcagaa atttgccaac tttcttgtac aaagtggttg 1081 gtaagcctat ccctaaccct ctcctcggtc tcgattctac gtagtaatga gctagcgcta 1141 accggtggcg cgttaagtcg acaatcaacc tctggatta