Construct: ORF ccsbBroad304_09525

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009338.1_s304c1, BRDN0000401126
Derived from:
ccsbBroadEn_09525
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CLHC1 (130162)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_09525
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 130162 CLHC1 clathrin heavy chain linker... NM_152385.4 99.8% 99.6% 84A>G;1276G>A;1508C>T
2 human 130162 CLHC1 clathrin heavy chain linker... NM_001353780.2 88.5% 88.3% (many diffs)
3 human 130162 CLHC1 clathrin heavy chain linker... NM_001135598.1 79% 78.8% 0_1ins366;910G>A;1142C>T
4 human 130162 CLHC1 clathrin heavy chain linker... NM_001353781.2 79% 78.8% 0_1ins366;910G>A;1142C>T
5 human 130162 CLHC1 clathrin heavy chain linker... NM_001353784.2 79% 78.8% 0_1ins366;910G>A;1142C>T
6 human 130162 CLHC1 clathrin heavy chain linker... NM_001353782.2 75.9% 71.8% (many diffs)
7 human 130162 CLHC1 clathrin heavy chain linker... NM_001353783.2 75.9% 71.8% (many diffs)
8 human 130162 CLHC1 clathrin heavy chain linker... NM_001353779.2 67.8% 67.5% (many diffs)
9 human 130162 CLHC1 clathrin heavy chain linker... NM_001353786.2 67.8% 67.5% (many diffs)
10 human 130162 CLHC1 clathrin heavy chain linker... NM_001353787.2 67.8% 67.5% (many diffs)
11 human 130162 CLHC1 clathrin heavy chain linker... NM_001353785.2 64.7% 60.5% (many diffs)
12 human 130162 CLHC1 clathrin heavy chain linker... NR_148541.2 23.6% (many diffs)
13 human 130162 CLHC1 clathrin heavy chain linker... NR_148540.2 22.4% (many diffs)
14 human 130162 CLHC1 clathrin heavy chain linker... NR_148543.2 18% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1824
ORF length:
1758
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgtc agttcatcaa ataagaaaac atgcagttct cccacctatc atttgtagaa
121gtgacaagga atttttggaa agtgtgcaga gatacataat tacagaaact gaaagactgg
181gctgtagtga ggaaggacct gctgatgaat attacatcat ataccgaaat gtttttgata
241aggtaataga gcatatcact gcatacaaat ccattcttac ttcaatcaaa aaagaatatg
301atgcctttat tgagacaata aagaaagacc gaagaactac attttgtctt catggaaaac
361ttaaaggttt ggcagcagag cctacagctt tggtatatta caggaaaaga acaatccaac
421ttgaagcaaa aatgaggatt atcgaaagta attcctcgaa gattcaatct caaatagatc
481acatcaagca gtgtagggca gagtatgaca caaaagaagt aaaatattgt actttctcca
541aagatccttc aaaacctatt ccaggcatga ctcttcaaga atccatgaat ctagatgctc
601tcactaaata catgaaacat cttgaagata aatatgcaga aattaaacaa gctatgttga
661taaaatatgt gccagctcag aggaaggctg atttagatga agaaatgatt gtgttattaa
721aacggcgaga tgtagctgaa aatctgaaca aaaaattgca gttttgtcat caaagactgc
781agataatttc acaggcactt agttcatggg taaaatctga tatgagcagc ccatttcaag
841actttgtgga gcaaattcag aaaaccaaat atttacaagg tgaccaaggc attgttgaag
901aactaatgga agatgatcca cgcagggcaa aagaagctga aattatgctt cactacattg
961aaaggtttaa tgagttaatc tcacttggtg aatatgaaaa ggcagcttgt tatgcagcaa
1021acagtcctag aagaattctt cgaaacattg gtacaatgaa tacatttaag gctgttggaa
1081aaattagagg aaagcctctt ccattactct tattttttga ggccctcttt atcacaagtc
1141atgcttttcc atgtcctgtt gatgcagctc taaccctgga aggaatcaaa tgtggattat
1201cagaaaaacg gttagattta gttaccaatt gggttacaca ggaaagactg acattttctg
1261aggaggctgg ggatgtgatt tgtgattatg gggagcagga tacttataac aaggccaagt
1321gcctggcttt agctcagatt atctacagtg aatgtggcct gcacaagaaa gctattcttt
1381gcttgtgtaa acagggtcag actcataggg tcatggagta catacagcag ttgaaggact
1441ttactaccga tgacctgttg cagctattaa tgtcatgtcc ccaagttgaa ttaattcagt
1501gtctcactaa agagttgaat gagaaacaac catctttatc ttttggtctt gctatacttc
1561atctgttctc tgtagacatg aaaaaagttg gcattaagct acttcaagaa atcaataaag
1621gtgggataga tgcagtagaa agtcttatga taaatgattc cttttgctcc atagaaaagt
1681ggcaagaagt ggcaaatata tgttcacaga atggctttga caaattatct aatgacatca
1741cgtctattct tcgatctcag gctgcagtta cagaaatttc tgaagaggat gacgcagtca
1801acctaatgga acatgtgttt tggtacccaa ctttcttgta caaagtggtt ggtaagccta
1861tccctaaccc tctcctcggt ctcgattcta cgtagtaatg agctagcgct aaccggtggc
1921gcgttaagtc gacaatcaac ctctggatta

Download FASTA (ORF) (Full)

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