Construct: ORF ccsbBroad304_09709
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014497.1_s304c1, BRDN0000407154
- Derived from:
- ccsbBroadEn_09709
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CFAP206 (154313)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_09709
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 154313 | CFAP206 | cilia and flagella associat... | NM_001031743.3 | 99.9% | 100% | 1428A>G |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1932
- ORF length:
- 1866
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgcc tccaactcag gccgaaagtg ttataaggag tattatacga gaaataggac 121 aagaatgtgc agcccatgga gagattgttt ctgaaactct gattgctttt atggtgaaag 181 ctgttgtcct ggatccaagt aatggcttta acatggatag aaccctcatg aaaagtgatg 241 tgcagaatct tgttaagctt tgtatgactc ggctattgga tactaaaaat ccatccctgg 301 acactattaa gatgcaagtc tacttcgata tgaattatac gaatcgagtg gaatttctcg 361 aagaacatca ccgggtccta gagtctagat taggctctgt tacccgagaa attacagata 421 acagagcatg tgctaaagaa gaattggaaa gcctctaccg gaagattatc agctatgtgt 481 tactccgctc tggccttgga tcccctacag acatcaagac tgtcagagag gtaacagctg 541 ctctacagag tgtttttcct caggcagagc ttgggacatt tctaactctt tctaagaagg 601 acaaagaacg ccagctgaaa gaactcacca tgattgttac tggaattcgt ttatttaaca 661 gagactgtgg aaaaggagga gaaggcattg atgatttgcc agctgttctc catgtagcaa 721 tcccagccac catgcagcat attgattacc agcttgagac tgcccggagc caggtatacc 781 gctacacagc catccttgag aaggcagcca acgacccact catgagggct gaacttcagc 841 catatatgtt aaaagaagcg ctatataata tacgacaata tgaggtcttc cttcagatca 901 ttttgtcaga tataattact ggtgctcaag aagtggaaat gatgacaaaa cagttaggag 961 cccatctgga acaactaaaa atgaccataa aatcaaagat agcggtccca acatcacaag 1021 tctttcctat cttcattgca ctttctactc tgtggaccag cttgcaagac gaaactattg 1081 tggttggtgt cctcagtaat ttattcactc acattcagcc attcttgggt gctcacgaac 1141 tatactttcc tgagagagtg atgcaatgtc atcttaatgg agcgactgtg aaaactgatg 1201 tgtgtagaat gaaagaacac atggaagata gagtaaatgt ggcagatttc agaaaactag 1261 aatggctttt cccagaaaca acagcaaatt ttgataaact gttaattcaa tatcggggat 1321 tttgtgctta cacgtttgct gcaacagatg gtcttctcct tccaggaaat ccagcaattg 1381 gaattttaaa atataaagaa aaatattaca cattcaatag taaagatgct gcatattcat 1441 ttgcagaaaa tcctgaacat tatattgaca tagttagaga aaaggccaaa aagaatacag 1501 agttaattca actattggaa cttcatcaac agtttgaaac atttattcca tattctcaga 1561 tgagagatgc tgacaaacat tatataaaac caattacaaa atgtgaaagt agcacacaga 1621 cgaatacaca catactgcca ccaacgattg tgagatcata tgagtggaat gaatgggaat 1681 taagaagaaa agctataaaa ttggctaatt tgcgccagaa agttactcac tcagtacaaa 1741 ctgatcttag tcacttgaga agagaaaatt gttcccaagt gtaccctcca aaggacacta 1801 gcacccagtc catgagggaa gacagcactg gggtgcccag gcctcagatt tacttggctg 1861 gtcttcgtgg aggaaagagc gaaatcaccg atgaggtcaa ggtgaactta actagagatg 1921 tggatgaaac ctacccaact ttcttgtaca aagtggttgg taagcctatc cctaaccctc 1981 tcctcggtct cgattctacg tagtaatgag ctagcgctaa ccggtggcgc gttaagtcga 2041 caatcaacct ctggatta