Construct: ORF ccsbBroad304_10021

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009362.1_s304c1, BRDN0000405457
Derived from:
ccsbBroadEn_10021
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
FAM170A (340069)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_10021
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 340069 FAM170A family with sequence simila... NM_001367956.1 100% 100%
2 human 340069 FAM170A family with sequence simila... NM_182761.3 99.6% 99.6% 987_988insAGC
3 human 340069 FAM170A family with sequence simila... NM_001163991.1 85.4% 85.4% 69_70ins141;846_847insAGC
4 mouse 225497 Fam170a family with sequence simila... XM_017317888.1 52% 49.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1059
ORF length:
990
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat gaaacgacga caaaagagga aacatttgga aaatgaagag tcccaggaaa
121ccgctgagaa gggaggagga atgtcaaagt cccaagagga tgccctgcag cctggatcca
181ctagagtggc caaaggctgg agccaagggg tgggagaagt tacttctacc tccgaatact
241gctcctgcgt ttcttcttca cgcaagctca tccacagtgg aatccagaga atacatcgag
301acagccccca gcctcaatca cccctggccc aggttcagga acgaggagag actcctcccc
361gctcacaaca tgtctccttg tcgtcctatt catcctataa gacttgtgtg tcctctctgt
421gtgtaaacaa agaggaaagg ggcatgaaaa tatactacat gcaggtacaa atgaacaaag
481gtgtggctgt ctcctgggag acagaggaaa ctttggagtc cttagaaaag cagccaagga
541tggaagaagt gaccctttct gaggttgtga gggtaggtac tcccccctct gatgtgtcca
601ccagaaacct cctgtctgac agtgagccca gtggggagga gaaagagcat gaggaaagga
661cagaatcaga cagcctgcca ggctcaccca ccgttgagga cacacccaga gccaagactc
721ctgactggct ggtgaccatg gagaacggct tcaggtgcat ggcctgctgc cgggtgttca
781ccaccatgga agccctccag gagcatgtgc agtttgggat cagagagggc ttcagctgcc
841acgtctttca tctcaccatg gctcagctga caggcaacat ggaatcagag agcacccaag
901atgagcagga ggaggaaaat ggaaatgaga aggaggagga agagaaacca gaagcaaagg
961aggaggaggg gcagcccaca gaagaagacc ttggcctgag gagatcctgg agccaatgtc
1021caggctgtgt gtttcattct ccaaaggaca ggaacagctt gccaactttc ttgtacaaag
1081tggttggtaa gcctatccct aaccctctcc tcggtctcga ttctacgtag taatgagcta
1141gcgctaaccg gtggcgcgtt aagtcgacaa tcaacctctg gatta

Download FASTA (ORF) (Full)