Construct: ORF ccsbBroad304_10458

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008637.1_s304c1, BRDN0000462317
Derived from:
ccsbBroadEn_10458
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PCDH12 (51294)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_10458
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 51294 PCDH12 protocadherin 12 NM_016580.3 99.5% 99.5% (many diffs)
2 human 51294 PCDH12 protocadherin 12 XM_024446106.1 99.5% 99.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
3627
ORF length:
3561
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgat gcaacttctg caacttctgc tggggctttt ggggccaggt ggctacttat
121ttcttttagg ggattgtcag gaggtgacca ctctcacggt gaaataccaa gtgtcagagg
181aagtgccatc tggtacagtg atcgggaagc tgtcccagga actgggccgg gaggagaggc
241ggaggcaagc tggggccgcc ttccaggtgt tgcagctgcc tcaggcgctc cccattcagg
301tggactctga ggaaggcttg ctcagcacag gcaggcggct ggatcgagag cagctatgcc
361gacagtggga tccctgcctg gtttcctttg atgtgcttgc cacaggggat ttggctctga
421tccatgtgga gatccaagtg ctggacatca atgaccacca gccacggttt cccaaaggcg
481agcaggagct ggaaatctct gagagcgcct ctctgcgaac ccggatcccc ctggacagag
541ctcttgaccc agacacaggc cctaacaccc tgcacaccta cactctgtct cccagtgagc
601actttgcctt ggatgtcatt gtgggccctg atgagaccaa acatgcagaa ctcatagtgg
661tgaaggagct ggacagggaa atccattcat tttttgatct ggtgttaact gcctatgaca
721atgggaaccc ccccaagtca ggtaccagct tggtcaaggt caacgtcttg gactccaatg
781acaatagccc tgcgtttgct gagagttcac tggcactgga aatccaagaa gatgctgcac
841ctggtacgct tctcataaaa ctgaccgcca cagaccctga ccaaggcccc aatggggagg
901tggagttctt cctcagtaag cacatgcctc cagaggtgct ggacaccttc agtattgatg
961ccaagacagg ccaggtcatt ctgcgtcgac ctctagacta tgaaaagaac cctgcctacg
1021aggtggatgt tcaggcaagg gacctgggtc ccaatcctat cccagcccat tgcaaagttc
1081tcatcaaggt tctggatgtc aatgacaaca tcccaagcat ccacgtcaca tgggcctccc
1141agccatcact ggtgtcagaa gctcttccca aggacagttt tattgctctt gtcatggcag
1201atgacttgga ttcaggaaac aatggtttgg tccactgctg gctgagccaa gagctgggcc
1261acttcaggct gaaaagaact aatggcaaca catacatgtt gctaaccaat gccacactgg
1321acagagagca gtggcccaaa tataccctca ctctgttagc ccaagaccaa ggactccagc
1381ccttatcagc caagaaacag ctcagcattc agatcagtga catcaacgac aatgcacctg
1441tgtttgagaa aagcaggtat gaagtctcca cgcgggaaaa caacttaccc tctcttcacc
1501tcattaccat caaggctcat gatgcagact tgggcattaa tggaaaagtc tcataccgca
1561tccaggactc cccagttgct cacttagtag ctattgactc caacacagga gaggtcactg
1621ctcagaggtc actgaactat gaagagatgg ccggctttga gttccaggtg atcgcagagg
1681acagcgggca acccatgctt gcatccagtg tctctgtgtg ggtcagcctc ttggatgcca
1741atgataatgc cccagaggtg gtccagcctg tgctcagcga tggaaaagcc agcctctccg
1801tgcttgtgaa tgcctccaca ggccacctgc tggtgcccat cgagactccc aatggcttgg
1861gcccagcggg cactgacaca cctccactgg ccactcacag ctcccggcca ttccttttga
1921caaccattgt ggcaagagat gcagactcgg gggcaaatgg agagcccctc tacagcatcc
1981gcagtggaaa tgaagcccac ctcttcatcc tcaaccctca tacggggcag ctgttcgtca
2041atgtcaccaa tgccagcagc ctcattggga gtgagtggga gctggagata gtagtagagg
2101accagggaag ccccccctta cagacccgag ccctgttgag ggtcatgttt gtcaccagtg
2161tggaccacct gagggactca gcccgcaagc ctggggcttt gagcatgtcg atgctgacgg
2221tgatctgcct ggctgtactg ctgggcatct tcgggttgat cctggctttg ttcatgtcca
2281tctgccggac agaaaagaag gacaacaggg cctacaactg tcgggaggcc gagtccgcct
2341accgccagca gcccaagagg ccccagaaac acattcagaa ggcagacatc cacctcgtgc
2401ctgtgctcag gggtcaggca ggtgagcctt gtgaagtcgg gcagtcccac aaagatgtgg
2461acaaggaggc gatgatggaa gcaggctggg acccctgcct gcaggccccc ttccacctca
2521ccccgaccct gtacaggacg ctgcgtaatc aaggcaacca gggagcaccg gcggagagcc
2581gagaggtgct gcaagacacg gtcaacctcc ttttcaacca tcccaggcag aggaatgcct
2641cccgggagaa cctgaacctt cccgagcccc agcctgccac aggccagcca cgttccaggc
2701ctctgaaggt tgcaggcagc cccacaggga ggctggctgg agaccagggc agtgaggaag
2761ccccacagag gccaccagcc tcctctgcaa ccctgagacg gcagcgacat ctcaatggca
2821aagtgtcccc tgagaaagaa tcagggcccc gtcagatcct gcggagcctg gtccggctgt
2881ctgtggctgc cttcgccgag cggaaccccg tggaggagct cactgtggat tctcctcctg
2941ttcagcaaat ctcccagctg ctgtccttgc tgcatcaggg ccaattccag cccaaaccaa
3001accaccgagg aaataagtac ttggccaagc caggaggcag caggagtgca atcccagaca
3061cagatggccc aagtgcaagg gctggaggcc agacagaccc agaacaggag gaagggcctt
3121tggatcctga agaggacctc tctgtgaagc aactgctaga agaagagctg tcaagtctgc
3181tggaccccag cacaggtctg gccctggacc ggctgagcgc ccctgacccg gcctggatgg
3241cgagactctc tttgcccctc accaccaact accgtgacaa tgtgatctcc ccggatgctg
3301cagccacgga ggagccgagg accttccaga cgttcggcaa ggcagaggca ccagagctga
3361gcccaacagg cacgaggctg gccagcacct ttgtctcgga gatgagctca ctgctggaga
3421tgctgctgga acagcgctcc agcatgcccg tggaggccgc ctccgaggcg ctgcggcggc
3481tctcggtctg cgggaggacc ctcagtttag acttggccac cagtgcagcc tcaggcatga
3541aagtgcaagg ggacccaggt ggaaagacgg ggactgaggg caagagcaga ggcagcagca
3601gcagcagcag cagcagcagg tgcctgtgcc caactttctt gtacaaagtg gttggtaagc
3661ctatccctaa ccctctcctc ggtctcgatt ctacgtagta atgagctagc gctaaccggt
3721ggcgcgttaa gtcgacaatc aacctctgga tta

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