Construct: ORF ccsbBroad304_10599

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000601.1_s304c1, BRDN0000462033
Derived from:
ccsbBroadEn_10599
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CCDC144B (284047)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_10599
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9720 CCDC144A coiled-coil domain containi... XR_001752702.1 86.5% (many diffs)
2 human 101929141 LOC101929141 coiled-coil domain-containi... NR_164151.1 61.2% (many diffs)
3 human 9720 CCDC144A coiled-coil domain containi... XR_001752703.1 56.9% (many diffs)
4 human 9720 CCDC144A coiled-coil domain containi... XR_001752704.1 52.2% (many diffs)
5 human 348254 CCDC144CP coiled-coil domain containi... NR_023380.1 51.2% (many diffs)
6 human 9720 CCDC144A coiled-coil domain containi... NM_014695.3 50.1% 48.2% (many diffs)
7 human 9720 CCDC144A coiled-coil domain containi... XM_017025430.1 48.7% 46.8% (many diffs)
8 human 9720 CCDC144A coiled-coil domain containi... XM_024451046.1 45.8% 40.9% (many diffs)
9 human 9720 CCDC144A coiled-coil domain containi... XM_017025429.2 45.5% 40.6% (many diffs)
10 human 9720 CCDC144A coiled-coil domain containi... XM_024451045.1 44.4% 39.7% (many diffs)
11 human 284047 CCDC144B coiled-coil domain containi... NR_036647.1 24.9% 1_170del;2346_8713del
12 human 9720 CCDC144A coiled-coil domain containi... NR_130142.2 24.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2244
ORF length:
2175
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat ggcctcctgg ggtggagaaa agcggggagg ggctgagggg tctccgaagc
121tggcagtcta cgccacgagg aagacccgta gcgtcaggag ccaggaggac cagtggtact
181tgggctaccc gggggaccag tggtcttcgg gcttctccta cagctggtgg aaaaatagcg
241tcggcagcga gagcaagcac ggtgagggcg ccttagacca gccccagcac gacgtccgcc
301tggaagatct tggcgagctc cacagagctg cccggtcggg cgacgtccct ggggtggagc
361acgtcttggc tcctggagac actggcgtgg acaagaggga taggaagaag agcattcagc
421aactagttcc tgaatataag gaaaaacaga cacctgaaag tcttcctcaa aataacaatc
481cagattggca tcctactaat ttgaccctta gtgatgagac ttgtcagaga tccaagaatc
541tgaaagttgg tgataaaagt ccatctgtat caccatcaat gcctgaaaat cagtcagcaa
601ccaaagaact gggacagatg aacttaacag aacgagaaaa aatggacact ggagttgtac
661ttctctcagg gaatgatact ctccatgacc tgtgccaatc acagctacca gaaaacaaag
721agagcaaaga agcagaacaa gacttggagc tgacatcaga ggaagagcaa gaaagactta
781aaggatgcga aaataagcag ccacagaaaa cgtctcaaga accagaaatg gctaaggatt
841gtgatagaga ggatatacct atatatccag tacttcctca tgtgcaaaaa tctgaggaaa
901tgtggattga acaaggcaaa ttagagtgga aaaaccaatt aaaactcgtc ataaatgagt
961taaagcagag gtttggtgaa atttatgaaa aatacaaaat tccggcttgt cctgaggaag
1021agccactact tgataactct acaagaggaa cagatgtgaa ggatattccc tttaatttga
1081caaataacat acctggttgt gaggaagaag atgcatctga aatatctgtc tcagtggtat
1141tcgagacatt tcctgaacaa aaagaaccca gtctcaaaaa tatcatccat ccatactatc
1201atccgtactc tgggtcccag gaacatgttt gccagtcatc ttctaagctt catttacatg
1261aaaataaatt agactgcgac aatgataaca aactaggcat tggacatatt tttagtacag
1321ataacaactt tcataatgat gcaagcacta agaaagcaag gaacccagaa gtggttacgg
1381ttgaaatgaa agaagaccaa gagtttgatt tgcaaatgac aaaaaatatg aaccaaaata
1441gtgacagtgg cagtacaaat aactataaaa gcctgaaacc taaattagaa aatctgagtt
1501ctttaccacc agattctgac agaacatcag aagtatatct acatgaagaa ttacagcaag
1561acatgcaaaa gtttaagaat gaggtcaaca cattagaaga agagttcctg gctttgaaga
1621aagaaaatgt tcaacttcat aaagaggttg aagaagaaat ggagaagcac agaagtaata
1681gcacagaatt atcaggaacc ctaactgatg gtactactgt tggcaatgat gatgatggac
1741taaatcagca gattcctagg aaggaaaatg aagagcatga caggcctgca gataaaacag
1801ctaatgaaaa gaacaaggtc aaaaaccaaa tatatcctga ggctgacttt gctgactcaa
1861tggagccatc tgaaatagcc tcagaggatt gtgaattgtc tcactctgtt tatgagaatt
1921ttatgttgct gattgaacaa cttagaatgg agtataaaga ttctgctagc ctaccaagaa
1981tccaagacac attttgtttg tgtgaacact tactgaaact taagaataat cactgtgacc
2041aacttacagt aaaacttaaa caaatggaaa atatggtcag tgtactacaa aatgagctat
2101ctgaaacaaa aaagacaaaa ttacagttag aacttcaaaa aattgaatgg gagaaagagc
2161tgtacgattt gagacttgcc ttaaaacaag aaaatgggag aaaagaaatg ccgatatgtt
2221gtataataaa gatagtgaac agtttgccaa ctttcttgta caaagtggtt ggtaagccta
2281tccctaaccc tctcctcggt ctcgattcta cgtagtaatg agctagcgct aaccggtggc
2341gcgttaagtc gacaatcaac ctctggatta

Download FASTA (ORF) (Full)

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