Construct: ORF ccsbBroad304_10599
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000601.1_s304c1, BRDN0000462033
- Derived from:
- ccsbBroadEn_10599
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CCDC144B (284047)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_10599
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 9720 | CCDC144A | coiled-coil domain containi... | XR_001752702.1 | 86.5% | (many diffs) | |
| 2 | human | 101929141 | LOC101929141 | coiled-coil domain-containi... | NR_164151.1 | 61.2% | (many diffs) | |
| 3 | human | 9720 | CCDC144A | coiled-coil domain containi... | XR_001752703.1 | 56.9% | (many diffs) | |
| 4 | human | 9720 | CCDC144A | coiled-coil domain containi... | XR_001752704.1 | 52.2% | (many diffs) | |
| 5 | human | 348254 | CCDC144CP | coiled-coil domain containi... | NR_023380.1 | 51.2% | (many diffs) | |
| 6 | human | 9720 | CCDC144A | coiled-coil domain containi... | NM_014695.3 | 50.1% | 48.2% | (many diffs) |
| 7 | human | 9720 | CCDC144A | coiled-coil domain containi... | XM_017025430.1 | 48.7% | 46.8% | (many diffs) |
| 8 | human | 9720 | CCDC144A | coiled-coil domain containi... | XM_024451046.1 | 45.8% | 40.9% | (many diffs) |
| 9 | human | 9720 | CCDC144A | coiled-coil domain containi... | XM_017025429.2 | 45.5% | 40.6% | (many diffs) |
| 10 | human | 9720 | CCDC144A | coiled-coil domain containi... | XM_024451045.1 | 44.4% | 39.7% | (many diffs) |
| 11 | human | 284047 | CCDC144B | coiled-coil domain containi... | NR_036647.1 | 24.9% | 1_170del;2346_8713del | |
| 12 | human | 9720 | CCDC144A | coiled-coil domain containi... | NR_130142.2 | 24.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2244
- ORF length:
- 2175
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcaccat ggcctcctgg ggtggagaaa agcggggagg ggctgagggg tctccgaagc 121 tggcagtcta cgccacgagg aagacccgta gcgtcaggag ccaggaggac cagtggtact 181 tgggctaccc gggggaccag tggtcttcgg gcttctccta cagctggtgg aaaaatagcg 241 tcggcagcga gagcaagcac ggtgagggcg ccttagacca gccccagcac gacgtccgcc 301 tggaagatct tggcgagctc cacagagctg cccggtcggg cgacgtccct ggggtggagc 361 acgtcttggc tcctggagac actggcgtgg acaagaggga taggaagaag agcattcagc 421 aactagttcc tgaatataag gaaaaacaga cacctgaaag tcttcctcaa aataacaatc 481 cagattggca tcctactaat ttgaccctta gtgatgagac ttgtcagaga tccaagaatc 541 tgaaagttgg tgataaaagt ccatctgtat caccatcaat gcctgaaaat cagtcagcaa 601 ccaaagaact gggacagatg aacttaacag aacgagaaaa aatggacact ggagttgtac 661 ttctctcagg gaatgatact ctccatgacc tgtgccaatc acagctacca gaaaacaaag 721 agagcaaaga agcagaacaa gacttggagc tgacatcaga ggaagagcaa gaaagactta 781 aaggatgcga aaataagcag ccacagaaaa cgtctcaaga accagaaatg gctaaggatt 841 gtgatagaga ggatatacct atatatccag tacttcctca tgtgcaaaaa tctgaggaaa 901 tgtggattga acaaggcaaa ttagagtgga aaaaccaatt aaaactcgtc ataaatgagt 961 taaagcagag gtttggtgaa atttatgaaa aatacaaaat tccggcttgt cctgaggaag 1021 agccactact tgataactct acaagaggaa cagatgtgaa ggatattccc tttaatttga 1081 caaataacat acctggttgt gaggaagaag atgcatctga aatatctgtc tcagtggtat 1141 tcgagacatt tcctgaacaa aaagaaccca gtctcaaaaa tatcatccat ccatactatc 1201 atccgtactc tgggtcccag gaacatgttt gccagtcatc ttctaagctt catttacatg 1261 aaaataaatt agactgcgac aatgataaca aactaggcat tggacatatt tttagtacag 1321 ataacaactt tcataatgat gcaagcacta agaaagcaag gaacccagaa gtggttacgg 1381 ttgaaatgaa agaagaccaa gagtttgatt tgcaaatgac aaaaaatatg aaccaaaata 1441 gtgacagtgg cagtacaaat aactataaaa gcctgaaacc taaattagaa aatctgagtt 1501 ctttaccacc agattctgac agaacatcag aagtatatct acatgaagaa ttacagcaag 1561 acatgcaaaa gtttaagaat gaggtcaaca cattagaaga agagttcctg gctttgaaga 1621 aagaaaatgt tcaacttcat aaagaggttg aagaagaaat ggagaagcac agaagtaata 1681 gcacagaatt atcaggaacc ctaactgatg gtactactgt tggcaatgat gatgatggac 1741 taaatcagca gattcctagg aaggaaaatg aagagcatga caggcctgca gataaaacag 1801 ctaatgaaaa gaacaaggtc aaaaaccaaa tatatcctga ggctgacttt gctgactcaa 1861 tggagccatc tgaaatagcc tcagaggatt gtgaattgtc tcactctgtt tatgagaatt 1921 ttatgttgct gattgaacaa cttagaatgg agtataaaga ttctgctagc ctaccaagaa 1981 tccaagacac attttgtttg tgtgaacact tactgaaact taagaataat cactgtgacc 2041 aacttacagt aaaacttaaa caaatggaaa atatggtcag tgtactacaa aatgagctat 2101 ctgaaacaaa aaagacaaaa ttacagttag aacttcaaaa aattgaatgg gagaaagagc 2161 tgtacgattt gagacttgcc ttaaaacaag aaaatgggag aaaagaaatg ccgatatgtt 2221 gtataataaa gatagtgaac agtttgccaa ctttcttgta caaagtggtt ggtaagccta 2281 tccctaaccc tctcctcggt ctcgattcta cgtagtaatg agctagcgct aaccggtggc 2341 gcgttaagtc gacaatcaac ctctggatta