Construct: ORF ccsbBroad304_10640
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008802.1_s304c1, BRDN0000412057
- Derived from:
- ccsbBroadEn_10640
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LINC02072 (440446)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_10640
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 440446 | LINC02072 | long intergenic non-protein... | NR_122104.1 | 19.8% | 1_403del;420T>N;929_2645del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 594
- ORF length:
- 525
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcaccat gcctcagtgg ctggnggcgt ccatcattcc tgggtgtgtc tgtgagagtg 121 tttccagagg agactcacat gtgagccagc gggctgagaa ggagacccgt tctcagtgtg 181 agtgtgcact gtccaatcag ctcaaggcca ggctggggac aaacaggcag aagaaggagg 241 attctctctc ccacctttct ggagcaggat gccttttctc cttggacatc agactacagg 301 gtctttggct tttggattct aggacttgta ccaatggcct cccggggccc tcaggccttc 361 agcctccaac gaaggtctgt gctgttggcc tccctgattc tgaggcttct ggacttggac 421 tgaggcatgc tacgggcttc tctgattctc cagcttgtgg atggcctatc atgggacttc 481 tccacctctg taatcacaag ggccaatgcc ccctaatacc tttcttttca tatatcctac 541 tggttctgtc tgcctgggga accttgacta atacagatat ggagcatttg aaattgccaa 601 ctttcttgta caaagtggtt ggtaagccta tccctaaccc tctcctcggt ctcgattcta 661 cgtagtaatg agctagcgct aaccggtggc gcgttaagtc gacaatcaac ctctggatta