Construct: ORF ccsbBroad304_10660

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004973.1_s304c1, BRDN0000412068
Derived from:
ccsbBroadEn_10660
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
LOC646938 (646938)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_10660
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 646938 LOC646938 TBC1 domain family member 2... NR_036495.1 52.5% (many diffs)
2 human 23102 TBC1D2B TBC1 domain family member 2B XM_017022022.1 10.5% 8.7% (many diffs)
3 human 23102 TBC1D2B TBC1 domain family member 2B XM_011521387.2 8.3% 6.9% (many diffs)
4 human 23102 TBC1D2B TBC1 domain family member 2B NM_144572.1 8% 6.6% (many diffs)
5 human 23102 TBC1D2B TBC1 domain family member 2B XR_001751162.1 4.5% (many diffs)
6 human 23102 TBC1D2B TBC1 domain family member 2B XR_001751163.1 3.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
324
ORF length:
255
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat ggggacaggc aggaagtcct tcggggcatt tctgtttcat cacagctttt
121cctggggctg gaagctgatc agtatctcct ttggggacct gaaccctttc cccgtacgcc
181agatccggaa ccaacgcgcc taccacttgg agaaagtccg gctggagctg accgagctgg
241aggccatccg tgaggacttc ctgcatgagc gggacaccag ccctgacaag ggtgagctgg
301tcagtgacga ggaggaggat accttgccaa ctttcttgta caaagtggtt ggtaagccta
361tccctaaccc tctcctcggt ctcgattcta cgtagtaatg agctagcgct aaccggtggc
421gcgttaagtc gacaatcaac ctctggatta

Download FASTA (ORF) (Full)