Transcript: Human XR_001751162.1

PREDICTED: Homo sapiens TBC1 domain family member 2B (TBC1D2B), transcript variant X2, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
TBC1D2B (23102)
Length:
3262
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001751162.1
NBCI Gene record:
TBC1D2B (23102)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_001751162.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000022131 GCAAGATTCGATGTCTATATT pLKO.1 2690 3UTR 100% 15.000 21.000 N TBC1D2B n/a
2 TRCN0000434107 CGCTACTTCACTCGCACTATC pLKO_005 2721 3UTR 100% 10.800 15.120 N TBC1D2B n/a
3 TRCN0000022129 CGCCCTTTGAAAGACATAATT pLKO.1 960 3UTR 100% 15.000 12.000 N TBC1D2B n/a
4 TRCN0000022133 CCAGAGATAACACTGATTTAA pLKO.1 556 3UTR 100% 15.000 10.500 N TBC1D2B n/a
5 TRCN0000416341 ATCCCAGTATGACAAGTATTT pLKO_005 1178 3UTR 100% 13.200 9.240 N TBC1D2B n/a
6 TRCN0000022132 CGTTAGTGACATCCTCTTTAA pLKO.1 2576 3UTR 100% 13.200 9.240 N TBC1D2B n/a
7 TRCN0000423997 CTCTCAGCTCTACGAAGAAAT pLKO_005 1584 3UTR 100% 13.200 9.240 N TBC1D2B n/a
8 TRCN0000420664 GAAAGTAAATACCTGATATTG pLKO_005 1671 3UTR 100% 13.200 9.240 N TBC1D2B n/a
9 TRCN0000022130 GCATTTGTTAAACCTCATCTT pLKO.1 1806 3UTR 100% 4.950 3.465 N TBC1D2B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001751162.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11676 pDONR223 100% 71.9% None (many diffs) n/a
2 TRCN0000476863 ATCCATATACTTACAGTTGACGCA pLX_317 15.5% 71.9% V5 (many diffs) n/a
3 ccsbBroadEn_10660 pDONR223 100% 4.5% None (many diffs) n/a
4 ccsbBroad304_10660 pLX_304 0% 4.5% V5 (many diffs) n/a
5 TRCN0000477217 GTGTGAATCAACGAGTAAATCGCC pLX_317 100% 4.5% V5 (many diffs) n/a
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