Construct: ORF ccsbBroad304_10719

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009647.1_s304c1, BRDN0000399635
Derived from:
ccsbBroadEn_10719
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CD48 (962)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_10719
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 962 CD48 CD48 molecule XM_005245625.1 81.5% 77.1% (many diffs)
2 human 962 CD48 CD48 molecule NM_001256030.1 62.9% 58.7% (many diffs)
3 human 962 CD48 CD48 molecule NM_001778.4 62.2% 55.1% (many diffs)
4 human 962 CD48 CD48 molecule XM_011510171.2 49.3% 42% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
573
ORF length:
507
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgtg ctccagaggt tgggattcgt gtctggctct ggaattgcta ctgctgcctc
121tgtcactcct ggtgaccagc attcaaggtc acttggtaca tatgaccgtg gtctccggca
181gcaacgtgac tctgaacatc tctgagagcc tgcctgagaa ctacaaacaa ctaacctggt
241tttatacttt cgaccagaag attgtagaat gggattccag aaaatctaag tactttgaat
301ccaaatttaa aggcagggtc agacttgatc ctcagagtgg cgcactgtac atctctaagg
361tccagaaaga ggacaacagc acctacatca tgagggtgtt gaaaaagact gggaatgagc
421aagaatggaa gatcaagctg caagtgcttg gtgagtcagg ggagccaaag agcaaatccc
481cactccagtg gccccagatg gaccactgta gggcttcctg ggaggcatgg ggcactctcg
541gggaggagga gagaaaaacc tcaggacaag tttgcccaac tttcttgtac aaagtggttg
601gtaagcctat ccctaaccct ctcctcggtc tcgattctac gtagtaatga gctagcgcta
661accggtggcg cgttaagtcg acaatcaacc tctggatta

Download FASTA (ORF) (Full)