Construct: ORF ccsbBroad304_11186

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003823.1_s304c1, BRDN0000400571
Derived from:
ccsbBroadEn_11186
DNA Barcode:
None
Epitope Tag:
V5 (not translated due to prior stop codon)
Notes:
Early stop codon detected

Originally Annotated References:

Gene:
TGFBR2 (7048)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_11186
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 7048 TGFBR2 transforming growth factor ... NM_003242.6 58.8% 22.5% 373_374insA;1003_1701del
2 human 7048 TGFBR2 transforming growth factor ... NM_001024847.2 56.3% 21.4% 95_169del;448_449insA;1078_1776del
3 human 7048 TGFBR2 transforming growth factor ... XM_011534043.2 54.7% 16.9% (many diffs)
4 human 7048 TGFBR2 transforming growth factor ... XM_011534045.3 52.7% 16.4% 0_1ins105;268_269insA;898_1596del
5 human 7048 TGFBR2 transforming growth factor ... XM_017007106.1 52.7% 16.4% 0_1ins105;268_269insA;898_1596del
6 mouse 21813 Tgfbr2 transforming growth factor,... NM_029575.3 50.3% 19.7% (many diffs)
7 mouse 21813 Tgfbr2 transforming growth factor,... NM_009371.3 48.7% 18.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
456
ORF length:
390
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggg tcgggggctg ctcaggggcc tgtggccgct gcacatcgtc ctgtggacgc
121gtatcgccag cacgatccca ccgcacgttc agaagtcggt taataacgac atgatagtca
181ctgacaacaa cggtgcagtc aagtttccac aactgtgtaa attttgtgat gtgagatttt
241ccacctgtga caaccagaaa tcctgcatga gcaactgcag catcacctcc atctgtgaga
301agccacagga agtctgtgtg gctgtatgga gaaagaatga cgagaacata acactagaga
361cagtttgcca tgaccccaag ctcccctacc atgactttat tcTGGAAGAT GCTGCTTCTC
421CAAAGTGCAT TATGAAGGAA AAAAAAAAAG CCTGGTGAGA CTTTCTTCAT GTGTTCCTGT
481AGCTCTGATG AGTGCAATGA CAACATCATC TTCTCAGAAG AATATAACAC CAGCAATCCT
541GACTTGTTGC TAGTCATATT TCAAGTGACA GGCATCAGCC TCCTGCCACC ACTGGGAGTT
601GCCATATCTG TCATCATCAT CTTCTACTGC TACCGCGTTA ACCGGCAGCA GAAGCTGAGT
661TCAACCTGGG AAACCGGCAA GACGCGGAAG CTCATGGAGT TCAGCGAGCA CTGTGCCATC
721ATCCTGGAAG ATGACCGCTC TGACATCAGC TCCACGTGTG CCAACAACAT CAACCACAAC
781ACAGAGCTGC TGCCCATTGA GCTGGACACC CTGGTGGGGA AAGGTCGCTT TGCTGAGGTC
841TATAAGGCCA AGCTGAAGCA GAACACTTCA GAGCAGTTTG AGACAGTGGC AGTCAAGATC
901TTTCCCTATG AGGAGTATGC CTCTTGGAAG ACAGAGAAGG ACATCTTCTC AGACATCAAT
961CTGAAGCATG AGAACATACT CCAGTTCCTG ACGGCTGAGG AGCGGAAGAC GGAGTTGGGG
1021AAACAATACT GGCTGATCAC CGCCTTCCAC GCCAAGGGCA ACCTACAGTA CCCAACTTTC
1081TTGTACaaag tggttggtaa gcctatccct aaccctctcc tcggtctcga ttctacgtag
1141taatgagcta gcgctaaccg gtggcgcgtt aagtcgacaa tcaacctctg gatta

Download FASTA (ORF) (Full)

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