Construct: ORF ccsbBroad304_11344

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018379.1_s304c1, BRDN0000411694
Derived from:
ccsbBroadEn_11344
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
MAP3K13 (9175)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_11344
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9175 MAP3K13 mitogen-activated protein k... XM_017007458.1 89.3% 89.3% 1_234del
2 human 9175 MAP3K13 mitogen-activated protein k... XM_017007459.2 89.3% 89.3% 1_234del
3 human 9175 MAP3K13 mitogen-activated protein k... NM_001242317.2 86.4% 86.4% 1_309del
4 human 9175 MAP3K13 mitogen-activated protein k... XM_017007457.1 80.2% 80.2% 1_483del
5 human 9175 MAP3K13 mitogen-activated protein k... NM_001242314.2 67.9% 67.9% 1_930del
6 human 9175 MAP3K13 mitogen-activated protein k... NM_004721.5 67.9% 67.9% 1_930del
7 human 9175 MAP3K13 mitogen-activated protein k... XM_011513310.2 67.9% 67.9% 1_930del
8 human 9175 MAP3K13 mitogen-activated protein k... XM_017007456.1 67.9% 67.9% 1_930del
9 mouse 71751 Map3k13 mitogen-activated protein k... NM_172821.3 57.1% 60.4% (many diffs)
10 mouse 71751 Map3k13 mitogen-activated protein k... XM_006522582.3 57.1% 60.4% (many diffs)
11 mouse 71751 Map3k13 mitogen-activated protein k... XM_006522583.3 57.1% 60.4% (many diffs)
12 mouse 71751 Map3k13 mitogen-activated protein k... XM_006522584.3 57.1% 60.4% (many diffs)
13 mouse 71751 Map3k13 mitogen-activated protein k... XM_011246015.2 57.1% 60.4% (many diffs)
14 mouse 71751 Map3k13 mitogen-activated protein k... XM_011246016.2 57.1% 60.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2037
ORF length:
1968
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat gtcatttgct ggcacggtcg catggatggc gccagaggtg atacggaatg
121aacctgtctc tgaaaaagtt gatatatggt cttttggagt ggtgctttgg gagctgctga
181caggagagat cccttacaaa gatgtagatt cttcagccat tatctggggt gttggaagca
241acagcctcca ccttccagtt ccttccactt gccctgatgg attcaaaatc cttatgaaac
301agacgtggca gagtaaacct cgaaaccgac cttcttttcg gcagacactc atgcatttag
361acattgcctc tgcagatgta cttgccaccc cacaagaaac ttacttcaag tctcaggctg
421aatggagaga agaagtgaaa aaacattttg agaagatcaa aagtgaagga acttgtatac
481accggttaga tgaagaactg attcgaaggc gcagagaaga gctcaggcat gcgctggata
541ttcgtgaaca ctatgagcgg aagcttgagc gggcgaataa tttatacatg gaattgagtg
601ccatcatgct gcagctagaa atgcgggaga aggagctcat taagcgtgag caagcagtgg
661aaaagaagta tcctgggacc tacaaacgac accctgttcg tcctatcatc catcccaatg
721ccatggagaa actcatgaaa aggaaaggag tgcctcacaa atctgggatg cagaccaaac
781ggccagactt gttgagatca gaagggatcc ccaccacaga agtggctccc actgcatccc
841ctttgtccgg aagtcccaaa atgtccactt ctagcagcaa gagccgatat cgaagcaaac
901cacgccaccg ccgagggaat agcagaggca gccatagtga ctttgccgca atcttgaaaa
961accagccagc ccaggaaaat tcaccccatc ccacttacct gcaccaagct caatcccaat
1021acccttctct tcatcaccat aattctctgc agcagcaata ccagcagccc cctcctgcca
1081tgtcccagag tcaccatccc agactcaata tgcacggaca ggacatagca acctgcgcca
1141acaacctgag gtatttcggc ccagcagcag ccctgcggag cccactcagc aaccatgctc
1201agagacagct gcccggctcg agccctgacc tcatctccac agccatggct gcagactgct
1261ggagaagttc tgagcctgac aagggccaag ctggtccctg gggctgttgc caggctgacg
1321cttatgaccc ctgccttcag tgcaggccag aacagtatgg gtccttagac ataccctctg
1381ctgagccagt ggggaggagc cctgaccttt ccaagtcacc agcacataat cctctcttgg
1441aaaacgccca gagttctgag aaaacggaag aaaatgaatt cagcggctgt aggtctgagt
1501catccctcgg cacctctcat ctcggcaccc ctccagcgct acctcgaaaa acaaggcctc
1561tgcagaagag tggagatgac tcctcagaag aggaagaagg ggaagtagat agtgaagttg
1621aatttccacg aagacagagg ccccatcgct gtatcagcag ctgccagtca tattcaacct
1681ttagctctga gaatttctct gtgtctgatg gagaagaggg aaataccagt gaccactcaa
1741acagtcctga tgagttagct gataaacttg aagaccgctt ggcagagaag ctagacgacc
1801tgctgtccca gacgccagag attcccattg acatatcctc acactcggat gggctctctg
1861acaaggagtg tgccgtgcgc cgtgtgaaga ctcagatgtc tctgggcaag ctgtgtgtgg
1921aggaacgtgg ctatgagaac cccatgcagt ttgaagaatc ggactgtgac tcttcagatg
1981gggagtgttc tgatgccaca gttaggacca ataaacacta cagctctgct acctggttgc
2041caactttctt gtacaaagtg gttggtaagc ctatccctaa ccctctcctc ggtctcgatt
2101ctacgtagta atgagctagc gctaaccggt ggcgcgttaa gtcgacaatc aacctctgga
2161tta

Download FASTA (ORF) (Full)

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