Construct: ORF ccsbBroad304_11375

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014975.1_s304c1, BRDN0000408841
Derived from:
ccsbBroadEn_11375
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PSMF1 (9491)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_11375
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9491 PSMF1 proteasome inhibitor subunit 1 NM_001323409.2 37.8% 36% 107T>G;282_364del;381_783del
2 human 9491 PSMF1 proteasome inhibitor subunit 1 NM_001323408.2 37.5% 35.7% 107T>G;282_364del;381_789del
3 human 9491 PSMF1 proteasome inhibitor subunit 1 NM_001323410.2 37.5% 35.7% 107T>G;282_364del;381_789del
4 human 9491 PSMF1 proteasome inhibitor subunit 1 NM_006814.5 36.4% 34.6% 107T>G;282_364del;381_813del
5 human 9491 PSMF1 proteasome inhibitor subunit 1 NM_178578.3 36.4% 34.6% 107T>G;282_364del;381_813del
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
366
ORF length:
297
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat ggcgggcctg gaggtactgt tcgcatcggc agcgccggcc atcacctgca
121ggcaggacgc gctcgtctgc ttcttgcatt gggaagtggt gacacacggt tactgcggct
181tgggtgtcgg tgaccagccg ggtcccaatg ataagaagtc agaactgctg ccagctgggt
241ggaacaacaa taaagacctg tatgtcctcc ggtatgagta taaggatggg tccagaaagc
301tccttgtgaa agccatcacc gtggagagca gcatgatcct caatgtgctg gacctacaag
361aacagttgcc aactttcttg tacaaagtgg ttggtaagcc tatccctaac cctctcctcg
421gtctcgattc tacgtagtaa tgagctagcg ctaaccggtg gcgcgttaag tcgacaatca
481acctctggat ta

Download FASTA (ORF) (Full)