Construct: ORF ccsbBroad304_11992

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004337.1_s304c1, BRDN0000400776
Derived from:
ccsbBroadEn_11992
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
NOP16 (51491)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_11992
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 51491 NOP16 NOP16 nucleolar protein NM_001256539.3 100% 100%
2 human 51491 NOP16 NOP16 nucleolar protein NM_001256540.4 99.5% 99.5% 391_392insAGC
3 human 51491 NOP16 NOP16 nucleolar protein NM_001291305.3 84.9% 69.9% 0_1ins73;142_175del;352_353insAGC
4 human 51491 NOP16 NOP16 nucleolar protein NR_134318.2 78.4% (many diffs)
5 human 51491 NOP16 NOP16 nucleolar protein NR_134316.2 70.5% (many diffs)
6 human 51491 NOP16 NOP16 nucleolar protein NM_001291307.3 59.4% 56.4% 391_392ins32;414_415ins250
7 human 51491 NOP16 NOP16 nucleolar protein NM_016391.8 56.8% 55.2% 392_479del;534_535ins250
8 human 51491 NOP16 NOP16 nucleolar protein NM_001317975.2 47.8% 42.4% (many diffs)
9 human 51491 NOP16 NOP16 nucleolar protein NM_001291308.3 42.6% 33.6% 215_216ins70;297_298ins329
10 human 51491 NOP16 NOP16 nucleolar protein XM_011534567.1 42.6% 33.6% 215_216ins70;297_298ins329
11 mouse 28126 Nop16 NOP16 nucleolar protein NM_178605.4 49.8% 51.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
762
ORF length:
696
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgcc caaggccaag ggcaaaaccc ggaggcagaa gtttggttac agtgtcaacc
121gaaagcgtct gaaccggaat gctcgacgga aggcagcgcc gcggatcgaa tgctcccaca
181tccgacatgc ctgggaccac gctaaatcgg tacggcagaa cctggccgag atggggttgg
241ctgtggaccc caacagggcg gtgcccctcc gtaagagaaa ggtgaaggcc atggaggtgg
301acatagagga gaggcctaaa gagcttgtac ggaagcccta tgtgctgaat gacctggagg
361cagaagccag ccttccagaa aagaaaggaa atactctgtc tcgggacctc attgactatg
421tacgctacat ggtagagaac cacggggagg actataagca gagtggcaag acttcctcga
481ttctttgcag aagaggaaga tggaggtgga gtgactggtt tacatcacag ctgccccagg
541ctgaggcgtc ccccggacca gtgaagctgg agccagggtg taaggcaagg aggtgctgtg
601tggctccaga ggagctggcc aggtcccatg gaatcagaag gttacacaca cacgtgcaca
661ctccccgctc tggggaagga actgttctca gaggctccaa tttatattca tctgggggtt
721cacggaaaag ccagaacctg ctgttttcag ggtgggtgat gtacccaact ttcttgtaca
781aagtggttgg taagcctatc cctaaccctc tcctcggtct cgattctacg tagtaatgag
841ctagcgctaa ccggtggcgc gttaagtcga caatcaacct ctggatta

Download FASTA (ORF) (Full)