Construct: ORF ccsbBroad304_12055

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF017447.1_s304c1, BRDN0000401479
Derived from:
ccsbBroadEn_12055
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CCHCR1 (54535)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_12055
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 54535 CCHCR1 coiled-coil alpha-helical r... XM_011514704.3 99.5% 99.3% (many diffs)
2 human 54535 CCHCR1 coiled-coil alpha-helical r... XM_011514705.1 99.5% 99.3% (many diffs)
3 human 54535 CCHCR1 coiled-coil alpha-helical r... XM_017010969.1 99.5% 99.3% (many diffs)
4 human 54535 CCHCR1 coiled-coil alpha-helical r... NM_019052.4 94.7% 94.2% (many diffs)
5 human 54535 CCHCR1 coiled-coil alpha-helical r... XM_011514703.1 94.7% 94.2% (many diffs)
6 human 54535 CCHCR1 coiled-coil alpha-helical r... XM_017010962.2 94.7% 94.2% (many diffs)
7 human 54535 CCHCR1 coiled-coil alpha-helical r... XM_017010963.1 94.7% 94.2% (many diffs)
8 human 54535 CCHCR1 coiled-coil alpha-helical r... XM_017010964.1 94.7% 94.2% (many diffs)
9 human 54535 CCHCR1 coiled-coil alpha-helical r... XM_017010965.1 94.7% 94.2% (many diffs)
10 human 54535 CCHCR1 coiled-coil alpha-helical r... XM_017010966.1 94.7% 94.2% (many diffs)
11 human 54535 CCHCR1 coiled-coil alpha-helical r... XM_017010967.1 94.7% 94.2% (many diffs)
12 human 54535 CCHCR1 coiled-coil alpha-helical r... XM_017010968.1 94.7% 94.2% (many diffs)
13 human 54535 CCHCR1 coiled-coil alpha-helical r... XM_024446473.1 91.7% 91.2% (many diffs)
14 human 54535 CCHCR1 coiled-coil alpha-helical r... NM_001105563.1 88.9% 88.7% (many diffs)
15 human 54535 CCHCR1 coiled-coil alpha-helical r... XM_011514702.2 88% 87.7% (many diffs)
16 human 54535 CCHCR1 coiled-coil alpha-helical r... NM_001105564.1 85% 84.6% (many diffs)
17 human 54535 CCHCR1 coiled-coil alpha-helical r... XM_017010961.1 84.2% 83.7% (many diffs)
18 human 54535 CCHCR1 coiled-coil alpha-helical r... XM_017010970.1 67.4% 67.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2307
ORF length:
2238
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat gtttccacct tcaggccatc aagatgtctc agagaggcgg ctagacaccc
121agagacctca agtgaccatg tgggaacggg atgtttccag tgacaggcag gagccagggc
181ggagaggcag gtcctggggg ctggaggggt cacaggccct gagccagcag gctgaggtga
241tcgttcggca gctgcaagag ctgcggcggc tggaggagga ggtccggctc ctgcgggaga
301cctcgctgca gcagaagatg aggctagagg cccaggccat ggagctagag gctctggcac
361gggcggagaa ggccggccga gctgaggctg agggcctgcg tgctgctttg gctggggctg
421aggttgtccg gaagaacttg gaagagggga ggcagcggga gctggaagag gttcagaggc
481tgcaccaaga gcagctgtcc tctttgacac aggctcacga ggaggctctt tccagtttga
541ccagcaaggc tgagggcttg gagaagtctc tgagtagtct ggaaaccaga agagcagggg
601aagccaagga gctggccgag gctcagaggg aggccgagct gcttcggaag cagctgagca
661agacccagga agacttggag gctcaggtga ccctggttga gaatctaaga aaatatgttg
721gggaacaagt gccttctgag gtccacagcc agacatggga actggagcga cagaagcttc
781tggaaaccat gcagcacttg caggaggacc gggacagcct gcatgccacc gcggagctgc
841tgcaggtgcg ggtgcagagc ctcacacaca tcctcgccct gcaggaggag gagctgacca
901ggaaggttca accttcagat tccctggagc ctgagtttac caggaagtgc cagtccctgc
961tgaaccgctg gcgggagaag gtgtttgccc tcatggtgca gctaaaggcc caggagctgg
1021aacacagtga ctctgttaag cagctgaagg gacaggtggc ctcactccag gaaaaagtga
1081catcccagag ccaggagcag gccatcctgc agcgatccct gcaggacaaa gccgcagagg
1141tggaggtgga gcgtatgggt gccaagggcc tgcagttgga gctgagccgt gctcaggagg
1201ccaggcgttg gtggcagcag cagacagccc cagccgagga gcagttgagg cttgtggtca
1261atgctgtcag cagctctcag atctggctcg agaccaccat ggctaaggtg gaaggggctg
1321ccgcccagct tcccagcctc aacaaccgac tcagctatgc tgtccgcaag gtccacacca
1381ttcggggcct gattgctcga aagcttgccc ttgctcagct gcgccaggag agctgtcccc
1441taccaccacc ggtcacagat gtgagccttg agttgcagca gctgcgggaa gaacggaacc
1501gcctggatgc agaactgcag ctgagtgccc gcctcatcca gcaggaggtg ggccgggctc
1561gggagcaagg ggaggcagag cggcagcagc tgagcaaggt ggcccagcag ctggagcagg
1621agctgcagca gacccaggag tccctggcta gcttggggct gcagctggag gtagcacgcc
1681agtgccagca ggagagcaca gaggaggctg ccagtctgcg gcaggagctg acccagcagc
1741aggaactcta cgggcaagcc ctgcaagaaa aggtggctga agtggaaact cggctgcggg
1801agcaactctc agacacagag aggaggctga acgaggctcg gagggagcat gccaaggccg
1861tggtctcctt gcgccagatt cagcgcagag ccgcccagga aaaggagcgg agccaggaac
1921tcaggcgtct gcaggaggag gcccggaagg aggaggggca gcgactggcc cggcgcttgc
1981aggagctaga gagggataag aacctcatgc tggccacctt gcagcaggaa ggtctcctct
2041cccgttacaa gcagcagcga ctgttgacag ttcttccttc cctactggat aagaagaaat
2101ctgtggtgtc cagccccagg cctccagagt gttcagcatc tgcacctgta gcagcagcag
2161tgcccaccag ggagtccata aaagggtccc tctctgtcct gctcgatgac ctgcaggacc
2221tgagtgaagc catttccaaa gaggaagctg tttgtcaagg agacaacctt gacagatgct
2281ccagctgcaa tccccagatg agcagcttgc caactttctt gtacaaagtg gttggtaagc
2341ctatccctaa ccctctcctc ggtctcgatt ctacgtagta atgagctagc gctaaccggt
2401ggcgcgttaa gtcgacaatc aacctctgga tta

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