Construct: ORF ccsbBroad304_12055
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017447.1_s304c1, BRDN0000401479
- Derived from:
- ccsbBroadEn_12055
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CCHCR1 (54535)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_12055
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 54535 | CCHCR1 | coiled-coil alpha-helical r... | XM_011514704.3 | 99.5% | 99.3% | (many diffs) |
| 2 | human | 54535 | CCHCR1 | coiled-coil alpha-helical r... | XM_011514705.1 | 99.5% | 99.3% | (many diffs) |
| 3 | human | 54535 | CCHCR1 | coiled-coil alpha-helical r... | XM_017010969.1 | 99.5% | 99.3% | (many diffs) |
| 4 | human | 54535 | CCHCR1 | coiled-coil alpha-helical r... | NM_019052.4 | 94.7% | 94.2% | (many diffs) |
| 5 | human | 54535 | CCHCR1 | coiled-coil alpha-helical r... | XM_011514703.1 | 94.7% | 94.2% | (many diffs) |
| 6 | human | 54535 | CCHCR1 | coiled-coil alpha-helical r... | XM_017010962.2 | 94.7% | 94.2% | (many diffs) |
| 7 | human | 54535 | CCHCR1 | coiled-coil alpha-helical r... | XM_017010963.1 | 94.7% | 94.2% | (many diffs) |
| 8 | human | 54535 | CCHCR1 | coiled-coil alpha-helical r... | XM_017010964.1 | 94.7% | 94.2% | (many diffs) |
| 9 | human | 54535 | CCHCR1 | coiled-coil alpha-helical r... | XM_017010965.1 | 94.7% | 94.2% | (many diffs) |
| 10 | human | 54535 | CCHCR1 | coiled-coil alpha-helical r... | XM_017010966.1 | 94.7% | 94.2% | (many diffs) |
| 11 | human | 54535 | CCHCR1 | coiled-coil alpha-helical r... | XM_017010967.1 | 94.7% | 94.2% | (many diffs) |
| 12 | human | 54535 | CCHCR1 | coiled-coil alpha-helical r... | XM_017010968.1 | 94.7% | 94.2% | (many diffs) |
| 13 | human | 54535 | CCHCR1 | coiled-coil alpha-helical r... | XM_024446473.1 | 91.7% | 91.2% | (many diffs) |
| 14 | human | 54535 | CCHCR1 | coiled-coil alpha-helical r... | NM_001105563.1 | 88.9% | 88.7% | (many diffs) |
| 15 | human | 54535 | CCHCR1 | coiled-coil alpha-helical r... | XM_011514702.2 | 88% | 87.7% | (many diffs) |
| 16 | human | 54535 | CCHCR1 | coiled-coil alpha-helical r... | NM_001105564.1 | 85% | 84.6% | (many diffs) |
| 17 | human | 54535 | CCHCR1 | coiled-coil alpha-helical r... | XM_017010961.1 | 84.2% | 83.7% | (many diffs) |
| 18 | human | 54535 | CCHCR1 | coiled-coil alpha-helical r... | XM_017010970.1 | 67.4% | 67.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2307
- ORF length:
- 2238
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcaccat gtttccacct tcaggccatc aagatgtctc agagaggcgg ctagacaccc 121 agagacctca agtgaccatg tgggaacggg atgtttccag tgacaggcag gagccagggc 181 ggagaggcag gtcctggggg ctggaggggt cacaggccct gagccagcag gctgaggtga 241 tcgttcggca gctgcaagag ctgcggcggc tggaggagga ggtccggctc ctgcgggaga 301 cctcgctgca gcagaagatg aggctagagg cccaggccat ggagctagag gctctggcac 361 gggcggagaa ggccggccga gctgaggctg agggcctgcg tgctgctttg gctggggctg 421 aggttgtccg gaagaacttg gaagagggga ggcagcggga gctggaagag gttcagaggc 481 tgcaccaaga gcagctgtcc tctttgacac aggctcacga ggaggctctt tccagtttga 541 ccagcaaggc tgagggcttg gagaagtctc tgagtagtct ggaaaccaga agagcagggg 601 aagccaagga gctggccgag gctcagaggg aggccgagct gcttcggaag cagctgagca 661 agacccagga agacttggag gctcaggtga ccctggttga gaatctaaga aaatatgttg 721 gggaacaagt gccttctgag gtccacagcc agacatggga actggagcga cagaagcttc 781 tggaaaccat gcagcacttg caggaggacc gggacagcct gcatgccacc gcggagctgc 841 tgcaggtgcg ggtgcagagc ctcacacaca tcctcgccct gcaggaggag gagctgacca 901 ggaaggttca accttcagat tccctggagc ctgagtttac caggaagtgc cagtccctgc 961 tgaaccgctg gcgggagaag gtgtttgccc tcatggtgca gctaaaggcc caggagctgg 1021 aacacagtga ctctgttaag cagctgaagg gacaggtggc ctcactccag gaaaaagtga 1081 catcccagag ccaggagcag gccatcctgc agcgatccct gcaggacaaa gccgcagagg 1141 tggaggtgga gcgtatgggt gccaagggcc tgcagttgga gctgagccgt gctcaggagg 1201 ccaggcgttg gtggcagcag cagacagccc cagccgagga gcagttgagg cttgtggtca 1261 atgctgtcag cagctctcag atctggctcg agaccaccat ggctaaggtg gaaggggctg 1321 ccgcccagct tcccagcctc aacaaccgac tcagctatgc tgtccgcaag gtccacacca 1381 ttcggggcct gattgctcga aagcttgccc ttgctcagct gcgccaggag agctgtcccc 1441 taccaccacc ggtcacagat gtgagccttg agttgcagca gctgcgggaa gaacggaacc 1501 gcctggatgc agaactgcag ctgagtgccc gcctcatcca gcaggaggtg ggccgggctc 1561 gggagcaagg ggaggcagag cggcagcagc tgagcaaggt ggcccagcag ctggagcagg 1621 agctgcagca gacccaggag tccctggcta gcttggggct gcagctggag gtagcacgcc 1681 agtgccagca ggagagcaca gaggaggctg ccagtctgcg gcaggagctg acccagcagc 1741 aggaactcta cgggcaagcc ctgcaagaaa aggtggctga agtggaaact cggctgcggg 1801 agcaactctc agacacagag aggaggctga acgaggctcg gagggagcat gccaaggccg 1861 tggtctcctt gcgccagatt cagcgcagag ccgcccagga aaaggagcgg agccaggaac 1921 tcaggcgtct gcaggaggag gcccggaagg aggaggggca gcgactggcc cggcgcttgc 1981 aggagctaga gagggataag aacctcatgc tggccacctt gcagcaggaa ggtctcctct 2041 cccgttacaa gcagcagcga ctgttgacag ttcttccttc cctactggat aagaagaaat 2101 ctgtggtgtc cagccccagg cctccagagt gttcagcatc tgcacctgta gcagcagcag 2161 tgcccaccag ggagtccata aaagggtccc tctctgtcct gctcgatgac ctgcaggacc 2221 tgagtgaagc catttccaaa gaggaagctg tttgtcaagg agacaacctt gacagatgct 2281 ccagctgcaa tccccagatg agcagcttgc caactttctt gtacaaagtg gttggtaagc 2341 ctatccctaa ccctctcctc ggtctcgatt ctacgtagta atgagctagc gctaaccggt 2401 ggcgcgttaa gtcgacaatc aacctctgga tta