Construct: ORF ccsbBroad304_12239

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008660.1_s304c1, BRDN0000402998
Derived from:
ccsbBroadEn_12239
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SYBU (55638)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_12239
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55638 SYBU syntabulin XM_011517154.2 92.1% 92.1% 1_117del
2 human 55638 SYBU syntabulin NM_001363032.2 91.4% 91.4% 1_129del
3 human 55638 SYBU syntabulin NM_001330596.2 85.7% 85.7% 1_228del
4 human 55638 SYBU syntabulin NM_001099746.1 84% 84% 1_261del
5 human 55638 SYBU syntabulin NM_001099749.2 84% 84% 1_261del
6 human 55638 SYBU syntabulin NM_001099755.2 84% 84% 1_261del
7 human 55638 SYBU syntabulin XM_017013614.1 84% 84% 1_261del
8 human 55638 SYBU syntabulin XM_017013615.1 84% 84% 1_261del
9 human 55638 SYBU syntabulin NM_001099756.1 69.2% 69.2% 1_609del
10 human 55638 SYBU syntabulin NM_001099743.2 69% 69% 1_615del
11 human 55638 SYBU syntabulin NM_001099747.2 69% 69% 1_615del
12 human 55638 SYBU syntabulin NM_001099751.1 69% 69% 1_615del
13 human 55638 SYBU syntabulin NM_001099753.2 69% 69% 1_615del
14 human 55638 SYBU syntabulin NM_017786.6 69% 69% 1_615del
15 human 55638 SYBU syntabulin NM_001099744.1 68.9% 68.9% 1_618del
16 human 55638 SYBU syntabulin NM_001099745.2 68.9% 68.9% 1_618del
17 human 55638 SYBU syntabulin NM_001099748.1 68.9% 68.9% 1_618del
18 human 55638 SYBU syntabulin NM_001099750.1 68.9% 68.9% 1_618del
19 human 55638 SYBU syntabulin NM_001099752.1 68.9% 68.9% 1_618del
20 human 55638 SYBU syntabulin NM_001099754.2 68.9% 68.9% 1_618del
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1437
ORF length:
1371
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgct gtgcaggaat cagctgagcc ctgtcaatat ccatcccagt tatgcacctt
121cttccccaag cagtagcaac tcaggctcct acaaaggaag cgactgtagc cccatcatga
181ggcgttctgg aaggtacatg tcttgcggtg aaaatcatgg tgtcagaccc ccaaacccag
241agcagtattt gactccactg cagcagaaag aggtgacagt gagacacctc aaaaccaagc
301tgaaggaatc tgagcgccga ctccatgaaa gggaaagtga aatcgtggag cttaagtccc
361agctggcccg catgcgagag gactggattg aggaggagtg tcaccgggta gaggcccagt
421tggcactcaa agaagccagg aaagagatta aacagctcaa acaggtcatc gaaaccatgc
481ggagcagctt ggctgataaa gataaaggca ttcagaaata ttttgtggac ataaacatcc
541aaaacaagaa gctggagtct ctccttcaga gcatggagat ggcacacagt ggctctctga
601gggacgaact gtgcctagac tttccatgtg attccccaga gaagagctta accctcaacc
661cccctcttga cacaatggca gatgggttat ctctggaaga gcaggtcacg ggggaagggg
721ctgacaggga gctactggta ggagatagca tagccaacag cacagatttg ttcgatgaga
781tagtgacagc caccaccaca gaatctggtg acctggagct tgtgcattcc acccctgggg
841ctaacgtcct ggagctgctg cccatagtca tgggtcagga ggagggcagt gtggtggtgg
901agcgagccgt tcagaccgac gtggtgccct acagcccagc catctcagag ctcattcaga
961gtgtgctgca gaagctccag gacccctgtc cctcgagctt ggcgtcccct gatgagtctg
1021aaccagactc gatggagagc ttcccagagt ccctctctgc cttagtggtt gatttaactc
1081caagaaatcc aaactcagcc atccttttgt ctcccgtgga gaccccctac gccaatgtgg
1141atgcagaagt tcatgcaaac cgcctcatga gagagctgga ttttgcagcc tgcgtggaag
1201agaggttgga tggtgtcatc ccactggctc gcgggggcgt cgtgaggcag tactggagca
1261gcagcttcct ggtggatctc ctggctgtgg ctgcccccgt ggtccccacg gttctgtggg
1321cattcagtac tcagagaggg ggaacggatc ctgtgtataa catcggggcc ttgctcaggg
1381gctgttgcgt ggttgccctg cattcgctcc gccgcaccgc cttccgtatc aaaacctacc
1441caactttctt gtacaaagtg gttggtaagc ctatccctaa ccctctcctc ggtctcgatt
1501ctacgtagta atgagctagc gctaaccggt ggcgcgttaa gtcgacaatc aacctctgga
1561tta

Download FASTA (ORF) (Full)

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