Construct: ORF ccsbBroad304_12293

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002491.1_s304c1, BRDN0000411941
Derived from:
ccsbBroadEn_12293
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SEPTIN3 (55964)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_12293
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55964 SEPTIN3 septin 3 NM_145733.3 96.3% 96.3% 1_39del
2 human 55964 SEPTIN3 septin 3 NM_019106.5 92% 89.5% (many diffs)
3 human 55964 SEPTIN3 septin 3 NM_001363845.2 40.3% 40.3% 1_1533del
4 mouse 24050 Sept3 septin 3 XM_017316607.1 90% 96% (many diffs)
5 mouse 24050 Sept3 septin 3 XM_017316608.1 89.7% 95.8% (many diffs)
6 mouse 24050 Sept3 septin 3 NM_011889.2 89% 92.5% (many diffs)
7 mouse 24050 Sept3 septin 3 XM_006520992.1 84.3% 88.7% (many diffs)
8 mouse 24050 Sept3 septin 3 XM_017316609.1 84.3% 88.7% (many diffs)
9 mouse 24050 Sept3 septin 3 XM_017316610.1 84% 88.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1104
ORF length:
1035
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat gtcagagctg gtgcctgagc ccaggcctaa gccagcggtg cccatgaagc
121ccatgagcat caactccaac ctgctgggct acatcggcat cgacaccatc atcgagcaga
181tgcgcaagaa gaccatgaag accggtttcg acttcaacat catggtcgtt ggccagagtg
241gactgggcaa atcaacgctg gtcaacacgc tcttcaaatc ccaagtgagc cgcaaggcct
301ccagctggaa ccgggaggag aagatcccca agacagtgga gatcaaagct atcgggcatg
361tgatagagga aggcggtgtc aaaatgaagc tgaccgtcat cgacacccca ggctttggag
421accaaatcaa caatgaaaac tgctgggagc ccattgagaa gtacatcaat gagcagtacg
481agaagttcct gaaggaggag gtcaacatcg ccaggaagaa acgcatccct gacactcgtg
541tccactgctg cctttacttc atctctccca caggacactc cttgcgacct ctggatcttg
601agttcatgaa acacctcagc aaggttgtga acatcatccc tgtcattgct aaggctgaca
661ccatgaccct ggaggagaag tctgaattca agcaaagggt tcgcaaggag cttgaagtaa
721atggcattga attctacccc cagaaggaat ttgatgagga tttggaggat aagacggaga
781atgacaaaat caggcaggag agcatgcctt ttgctgtggt gggaagtgac aaggagtacc
841aagtgaatgg caagagggtc ctcggccgaa aaactccatg ggggatcatc gaagtggaaa
901acctcaacca ctgtgagttt gccctgcttc gagactttgt catcaggacc cacctccagg
961acctcaagga agtgacacac aacatccact atgagactta cagggccaag cggctcaatg
1021acaatggagg cctccctccg ggagaaggcc tcctgggcac tgtccttcca cctgtgccag
1081ccaccccctg ccccactgct gaattgccaa ctttcttgta caaagtggtt ggtaagccta
1141tccctaaccc tctcctcggt ctcgattcta cgtagtaatg agctagcgct aaccggtggc
1201gcgttaagtc gacaatcaac ctctggatta

Download FASTA (ORF) (Full)