Construct: ORF ccsbBroad304_12341
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005771.1_s304c1, BRDN0000401489
- Derived from:
- ccsbBroadEn_12341
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF287 (57336)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_12341
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 57336 | ZNF287 | zinc finger protein 287 | NM_001346167.1 | 99% | 99% | 1_21del |
| 2 | human | 57336 | ZNF287 | zinc finger protein 287 | NM_001346168.1 | 99% | 99% | 1_21del |
| 3 | human | 57336 | ZNF287 | zinc finger protein 287 | NM_001346169.1 | 99% | 99% | 1_21del |
| 4 | human | 57336 | ZNF287 | zinc finger protein 287 | NM_020653.4 | 99% | 99% | 1_21del |
| 5 | human | 57336 | ZNF287 | zinc finger protein 287 | XM_011523968.2 | 99% | 99% | 1_21del |
| 6 | human | 57336 | ZNF287 | zinc finger protein 287 | NM_001346170.1 | 87.4% | 81.2% | (many diffs) |
| 7 | human | 57336 | ZNF287 | zinc finger protein 287 | NM_001346171.1 | 78.5% | 78.5% | 0_1ins486 |
| 8 | mouse | 170740 | Zfp287 | zinc finger protein 287 | XM_017314304.1 | 63.5% | 65.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2331
- ORF length:
- 2262
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcaccat gaacagttct tcacgttctc aaatccttct aaggtggaag tcagacaagg 121 ctcagagtgg accctacaat gttgagaagg aaatccttac ttcaagattc ttgcgtgaca 181 ctgagacctg tcgacagaat tttaggaatt ttccataccc agacctggct ggtcctcgaa 241 aggcattgag tcaactccga gagctctgcc ttaagtggct gagacctgag attcactcaa 301 aggaacaaat tttggagctg ctggtgctgg agcaattcct gaccatcctg cctggtgagg 361 ttaggacttg ggtaaagtcc cagtatccag agagcagcga ggaagcagtg actctggtgg 421 aggatttgac tcagattcta gaagaggaag ctcctcaaaa ctctaccctt tcccaagata 481 ccccagagga agaccccaga ggaaaacatg ctttccagac aggatggcta aatgacttgg 541 tgaccaaaga atcgatgaca ttcaaagatg tggctgtaga catcacccag gaggactggg 601 agttaatgcg tcctgtgcag aaggaattat acaagactgt gacgttacag aactattgga 661 acatggtttc tctgggactt acagtgtaca gaccaactgt gattcccata ttggaagaac 721 catggatggt gataaaagaa attttagaag gccctagtcc agaatgggaa actaaagccc 781 aagcatgtac tccagtggag gatatgtcta aactcacaaa ggaagaaacc cataccatca 841 aattagaaga ctcatatgac tacgatgata gactagagag gcgaggaaaa ggtggcttct 901 ggaaaattca cactgatgaa agaggtttca gtttgaagtc agtcctttca caagaatatg 961 atcctacaga agaatgtctt agtaaatatg atatatatag aaataatttt gaaaagcatt 1021 caaacctaat tgtacagttt gatacccaat tagataataa aacttctgtg tataatgaag 1081 gcagggcaac cttcaatcat gtctcatatg gtattgtaca taggaaaata cttcctggag 1141 agaagcctta caagtgtaat gtgtgtggga aaaaatttag gaaataccca tccctcctga 1201 aacaccaaag tacccatgcc aaagagaaat cgtatgaatg tgaagaatgt gggaaagagt 1261 ttaggcatat ctcatccctt attgcacatc agagaatgca cactggagaa aaaccatatg 1321 aatgccacca gtgtggtaaa gccttcagcc agcgtgcaca ccttactata catcagagaa 1381 ttcatactgg agagaaaccc tataagtgtg atgactgtgg gaaagacttc agtcagcgtg 1441 cacaccttac catccatcaa aggacacata ctggagagaa accatataaa tgcttggaat 1501 gtggtaaaac cttcagtcat agttcatcac tgattaatca tcagagagtt catactggag 1561 aaaaacctta tatatgcaat gaatgtggga agactttcag tcagagtaca caccttcttc 1621 agcatcaaaa aatacatact gggaagaaac catataaatg caatgaatgt tggaaagtgt 1681 ttagtcagag tacttacctt attcgacatc agagaattca ttctggagag aagtgttata 1741 aatgtaatga atgtggaaaa gcctttgctc attcctcaac ccttattcaa catcaaacca 1801 ctcacactgg agagaaatcc tatatatgta atatatgtgg gaaagccttc agccagagtg 1861 caaatcttac tcaacatcat agaacacata ctggagagaa accatataaa tgcagtgtgt 1921 gtgggaaagc attcagccag agtgtgcacc ttactcaaca tcagaggatt cataatggag 1981 aaaaaccctt taaatgcaat atatgtggga aagcatatag acaaggcgca aatcttactc 2041 agcatcaaag gattcatact ggagaaaaac cctataaatg taatgaatgt gggaaagctt 2101 tcatttattc ctcatcactt aatcaacatc agagaactca tactggagag agaccctata 2161 aatgtaatga atgtgataag gattttagcc agagaacatg ccttattcaa caccagagaa 2221 ttcacacagg agagaaaccc tatgcatgtc gtatatgtgg taaaaccttc acccagagta 2281 caaaccttat tcagcatcaa cgtgttcata caggtgccaa acatcgtaat ttgccaactt 2341 tcttgtacaa agtggttggt aagcctatcc ctaaccctct cctcggtctc gattctacgt 2401 agtaatgagc tagcgctaac cggtggcgcg ttaagtcgac aatcaacctc tggatta