Transcript: Human NM_001346171.1

Homo sapiens zinc finger protein 287 (ZNF287), transcript variant 6, mRNA.

Source:
NCBI, updated 2019-09-25
Taxon:
Homo sapiens (human)
Gene:
ZNF287 (57336)
Length:
7384
CDS:
713..2491

Additional Resources:

NCBI RefSeq record:
NM_001346171.1
NBCI Gene record:
ZNF287 (57336)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001346171.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000015241 GCATATAGACAAGGCGCAAAT pLKO.1 2171 CDS 100% 10.800 15.120 N ZNF287 n/a
2 TRCN0000229721 CATAGTTCATCACTGATTAAT pLKO_005 1676 CDS 100% 15.000 10.500 N ZNF287 n/a
3 TRCN0000229723 GGTATGGATATAACCTATTTA pLKO_005 2627 3UTR 100% 15.000 10.500 N ZNF287 n/a
4 TRCN0000229722 GGTGCCAAACATCGTAATTAA pLKO_005 2471 CDS 100% 15.000 10.500 N ZNF287 n/a
5 TRCN0000218155 ACCAACTGTGATTCCCATATT pLKO_005 850 CDS 100% 13.200 9.240 N ZNF287 n/a
6 TRCN0000015242 CCAGTGGAGGATATGTCTAAA pLKO.1 950 CDS 100% 13.200 9.240 N ZNF287 n/a
7 TRCN0000229720 TCCAGACAGGATGGCTAAATG pLKO_005 672 5UTR 100% 13.200 9.240 N ZNF287 n/a
8 TRCN0000015240 GCATGTCGTATATGTGGTAAA pLKO.1 2402 CDS 100% 10.800 7.560 N ZNF287 n/a
9 TRCN0000015238 CCCTCCTGAAACACCAAAGTA pLKO.1 1350 CDS 100% 5.625 3.938 N ZNF287 n/a
10 TRCN0000015239 CCCTACAATGTTGAGAAGGAA pLKO.1 290 5UTR 100% 3.000 2.100 N ZNF287 n/a
11 TRCN0000235191 ACTGGAGAGAAACCATATAAA pLKO_005 1628 CDS 100% 15.000 7.500 Y Gm4767 n/a
12 TRCN0000235210 ACTGGAGAGAAACCATATAAA pLKO_005 1628 CDS 100% 15.000 7.500 Y EG666477 n/a
13 TRCN0000429866 AGGTTAGGACTTGGGTAAATT pLKO_005 516 5UTR 100% 15.000 21.000 N Zfp287 n/a
14 TRCN0000218427 ACTGGAGAGAAACCCTATAAA pLKO_005 1544 CDS 100% 15.000 7.500 Y ZNF443 n/a
15 TRCN0000374174 ACTGGAGAGAAACCCTATAAA pLKO_005 1544 CDS 100% 15.000 7.500 Y Zfp97 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001346171.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_12341 pDONR223 100% 78.5% 78.5% None 0_1ins486 n/a
2 ccsbBroad304_12341 pLX_304 0% 78.5% 78.5% V5 0_1ins486 n/a
3 TRCN0000470094 AATTGTGCAGTATATTCCAGATCG pLX_317 20.7% 78.5% 78.5% V5 0_1ins486 n/a
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