Construct: ORF ccsbBroad304_12379
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000590.1_s304c1, BRDN0000403752
- Derived from:
- ccsbBroadEn_12379
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- EP400 (57634)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_12379
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 57634 | EP400 | E1A binding protein p400 | NM_015409.5 | 29.9% | 29.8% | (many diffs) |
| 2 | mouse | 75560 | Ep400 | E1A binding protein p400 | XM_006535276.3 | 26.3% | 27.4% | (many diffs) |
| 3 | mouse | 75560 | Ep400 | E1A binding protein p400 | XM_017321135.1 | 26.1% | 27.2% | (many diffs) |
| 4 | mouse | 75560 | Ep400 | E1A binding protein p400 | XM_006535271.3 | 25.7% | 26.7% | (many diffs) |
| 5 | mouse | 75560 | Ep400 | E1A binding protein p400 | XM_006535270.3 | 25.6% | 26.6% | (many diffs) |
| 6 | mouse | 75560 | Ep400 | E1A binding protein p400 | XM_006535269.3 | 25.5% | 26.6% | (many diffs) |
| 7 | mouse | 75560 | Ep400 | E1A binding protein p400 | XM_017321131.1 | 25.5% | 26.5% | (many diffs) |
| 8 | mouse | 75560 | Ep400 | E1A binding protein p400 | XM_006535265.3 | 25.5% | 26.5% | (many diffs) |
| 9 | mouse | 75560 | Ep400 | E1A binding protein p400 | XM_017321129.1 | 25.5% | 26.5% | (many diffs) |
| 10 | mouse | 75560 | Ep400 | E1A binding protein p400 | XM_017321130.1 | 25.5% | 26.5% | (many diffs) |
| 11 | mouse | 75560 | Ep400 | E1A binding protein p400 | XM_017321132.1 | 24.5% | 25.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 3021
- ORF length:
- 2955
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgca ccatggcact ggcccccaga acgtccagca tcagctgcag aggtccaggg 121 cctgccctgg cagcgagggt gaggagcagc cggcccaccc caacccaccc ccgtcccccg 181 cagctccctt cgctccctca gcaagcccgt cggcacccca gtctcccagt tatcaaatac 241 agcagctgat gaataggagc cctgcaaccg ggcagaacgt gaacatcacc ctgcagagcg 301 tgggccctgt cgtcggggga aaccagcaga tcacactggc cccactgccg ctccccagcc 361 ccacctctcc aggcttccag ttcagcgctc agcctcggcg gtttgagcat gggtctccat 421 catacattca ggtcacgtcc cccttgtccc agcaggtcca gacccagagt cccacgcagc 481 ccagtccggg gccggggcag gccttgcaga atgtgcgtgc aggtgcccct ggccctgggc 541 tgggcctctg cagcagcagc cctacagggg gcttcgtgga tgccagcgtg ctggtgaggc 601 agatcagctt gagcccctcc agtggtggac actttgtgtt tcaggatggg tcagggctca 661 cccagatcgc ccagggagcc caggttcagc tccagcaccc gggtacgccc atcacagtcc 721 gagagcggag accctcccag ccccacacac agtcaggggg caccatccac cacctgggac 781 cccagagccc tgcagccgcg ggtggggccg gcctgcagcc cctggccagc ccaagccaca 841 tcaccacggc taacttgcca ccgcagatca gcagcatcat ccagggccag ctggttcagc 901 agcagcaggt gctgcagggg ccgccgctgc cccggcccct gggcttcgag aggacgcccg 961 gcgtgctgct ccccggggct gggggcgcag cggggtttgg gatgacgtcc ccacccccgc 1021 ccaccagccc ttccaggact gccgtgcccc caggcctttc cagcctccca ctcacgtctg 1081 tggggaacac gggaatgaag aaggttccca agaagttaga ggagattccc ccagcctctc 1141 cggagatggc acagatgagg aagcagtgcc tggactatca ttaccaggag atgcaggctc 1201 tgaaggaggt cttcaaggag tatttgattg aactgttttt cttgcaacac tttcaaggga 1261 acatgatgga tttcttagct ttcaagaaga aacattatgc cccattacaa gcatatctta 1321 ggcagaatga tttggacatt gaagaagagg aggaggagga ggaagaggag gaagaaaaat 1381 ctgaggttat caatgacgag gtaaaggttg tgacaggaaa ggatgggcag actgggactc 1441 ccgttgctat agcaacccag cttccgccaa aggtttctgc tgctttttca tcccagcagc 1501 aaccatttca gcaagccctc gcagggagcc tggtagcagg ggccggaagc acagtagaga 1561 cggacctgtt taagaggcag caggcgatgc cctccacagg tatggcagag cagtctaaga 1621 ggcctcgcct tgaagtgggt caccaagggg tagttttcca gcacccaggg gcgggcgcag 1681 gcgttcctct ccagcaacta atgccgaccg cacaaggagg aatgcccccc acgccgcagg 1741 ccgcgcagct cgctggacag aggcagagtc agcagcagta tgacccctcc acggggcctc 1801 ccgtgcagaa cgctgccagc ttgcacaccc cactgccgca gctgcccggg aggctgcccc 1861 cagccggtgt tcccactgca gccctctcct ctgcgctgca gtttgcacag cagccgcaag 1921 tggtagaggc ccagacacag ctccaaatcc cggtgaagac tcagcagccc aatgttccca 1981 tccctgcacc gcccagcagc caactcccca tccctccctc gcagcctgca cagctggccc 2041 tccacgttcc cacacctgga aaggtgcagg tgcaggcctc tcagctttcc tccctgccac 2101 agatggtagc atcgacaagg ctccctgtgg accctgcccc gccctgccca cggcctctgc 2161 ccacctcttc tacctcgtcc ctcgcgcctg tgagtggctc cggcccggga ccctcccctg 2221 ctcgatcctc tccagtaaat agaccttcct cagccaccaa taaggcacta tctccagtca 2281 cttcccggac cccaggggtg gtggcatctg cccccaccaa accacagagt cctgctcaga 2341 atgccacctc gtcccaagac agttctcagg atacgctgac agaacaaata actctggaga 2401 accaggtgca tcagcgcatt gcggagctga ggaaagcagg tctgtggtcc cagaggcgtc 2461 tgccaaagct gcaggaggcc ccacgcccca agccccactg ggactatcTG CTGGAGGAGA 2521 TGCAGTGGAT GGCCACAGAC TTTGCCCAGG AGAGGAGGTG GAAGGTGGCT GCTGCGAAGA 2581 AGCTCGTTAG AACTGTGGTG CGCCATCACG AGGAGAAGCA GCTCCGTGAA GAAAGGGGGA 2641 AGAAGGAAGA GCAGAGCAGA CTGAGGCGGA TAGCCGCCTC CACGGCCCGG GAGATAGAGT 2701 GCTTTTGGTC GAATATTGAA CAGGTTGTGG AAATAAAACT ACGAGTAGAA TTAGAAGAAA 2761 AAAGGAAGAA GGCCTTAAAT TTACAGAAAG TTTCCAGGAG AGGGAAAGAA TTGAGACCTA 2821 AAGGATTTGA CGCATTACAG GAAAGTTCTC TGGATTCAGG AATGTCTGGA AGAAAAAGAA 2881 AAGCTAGCAT ATCTTTGACT GATGACGAAG TGGACGATGA AGAGGAAACA ATTGAAGAGG 2941 AGGAAGCAAA TGAAGGCGTT GTGGACCACC AAACAGAACT TTCTAATTTA GCCAAGGAAG 3001 GTAGGCTGTT GCTACCTTAT TACccaactt acttgtacaa agtggttggt aagcctatcc 3061 ctaaccctct cctcggtctc gattctacgt agtaatgagc tagcgctaac cggtggcgcg 3121 ttaagtcgac aatcaacctc tggatta