Construct: ORF ccsbBroad304_12431
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002106.1_s304c1, BRDN0000408994
- Derived from:
- ccsbBroadEn_12431
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- THADA (63892)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_12431
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 63892 | THADA | THADA armadillo repeat cont... | XM_017004675.1 | 63.7% | 63.6% | 1_1149del;1465A>T |
| 2 | human | 63892 | THADA | THADA armadillo repeat cont... | XM_006712069.3 | 59.3% | 59.2% | 1_1386del;1702A>T |
| 3 | human | 63892 | THADA | THADA armadillo repeat cont... | XM_006712067.1 | 36.7% | 36.7% | 1_3471del;3787A>T |
| 4 | human | 63892 | THADA | THADA armadillo repeat cont... | XM_006712066.1 | 36.7% | 36.7% | 1_3474del;3790A>T |
| 5 | human | 63892 | THADA | THADA armadillo repeat cont... | NM_001345924.1 | 35.2% | 35.1% | 1_3714del;4030A>T |
| 6 | human | 63892 | THADA | THADA armadillo repeat cont... | XM_006712063.1 | 35.2% | 35.1% | 1_3717del;4033A>T |
| 7 | human | 63892 | THADA | THADA armadillo repeat cont... | NM_001345923.1 | 34.5% | 34.4% | 1_3834del;4150A>T |
| 8 | human | 63892 | THADA | THADA armadillo repeat cont... | NM_001083953.1 | 34.4% | 34.4% | 1_3837del;4153A>T |
| 9 | human | 63892 | THADA | THADA armadillo repeat cont... | NM_001345925.1 | 34.4% | 34.4% | 1_3837del;4153A>T |
| 10 | human | 63892 | THADA | THADA armadillo repeat cont... | NM_022065.4 | 34.4% | 34.4% | 1_3837del;4153A>T |
| 11 | human | 63892 | THADA | THADA armadillo repeat cont... | XM_006712065.1 | 34% | 32.8% | (many diffs) |
| 12 | human | 63892 | THADA | THADA armadillo repeat cont... | NR_073394.1 | 33.5% | (many diffs) | |
| 13 | human | 63892 | THADA | THADA armadillo repeat cont... | XM_006712064.2 | 32.2% | 32.2% | 1_3837del;4153A>T;5163_5164ins132 |
| 14 | human | 63892 | THADA | THADA armadillo repeat cont... | NR_144316.1 | 31.1% | (many diffs) | |
| 15 | human | 63892 | THADA | THADA armadillo repeat cont... | XM_006712068.3 | 8.6% | 8.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2088
- ORF length:
- 2022
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgac agggagagag tttttctctc gtttcccaga actctatcct tttcttctca 121 aacagttgga aactgtagcc aatacagtag acagtgatat gggagaacca aatcgtcatc 181 caagcatgtt tctcttactt ttggtgttgg agagactcta cgcttccccg atggatggta 241 cttcttctgc tctcagcatg ggaccttttg ttcccttcat tatgaggtgt ggtcactcac 301 ctgtctacca ctcccgtgaa atggcagctc gtgccttggt cccatttgtt atgatagatc 361 acattcctaa taccattcga tctctgttgt ccacactccc cagctgcact gaccagtgtt 421 tccggcaaaa ccacattcat gggacacttc tccaggtttt tcatttgttg caagcctact 481 cagactccaa acacggaacg aattcagact tccagcacga gctgactgac atcactgttt 541 gtaccaaagc caaactctgg ctggccaaga ggcaaaatcc atgtttggtg accagagctg 601 tatatattga tattctcttc ctattgactt gctgcctcaa cagatctgca aaggacaacc 661 agccagttct ggagagtctt ggcttctggg aggaagtcag agggattatc tcaggatcag 721 agctgataac gggattccct tgggccttca aggtgccagg cctgccccag tacctccaga 781 gcctcaccag actagccatt gctgcagtgt gggccgcggc agccaagagt ggagagcggg 841 agacgaatgt ccccatctct ttctctcagc tgttagaatc tgccttccct gaagtgcgct 901 cactaacact ggaagccctc ttggaaaagt tcttagcagc agcctctgga cttggagaga 961 agggcgtgcc acccttgctg tgcaacatgg gagagaagtt cttattgttg gccatgaagg 1021 aaaatcaccc agaatgcttc tgcaagatac tgaaaattct ccactgcatg gaccctggtg 1081 agtggcttcc ccagacggag cactgtgtcc atctgacccc aaaggagttc ttgatctgga 1141 cgatggatat tgcttccaat gaaagatctg aaattcagag tgtagctctg agacttgctt 1201 ccaaagtcat ttcccaccac atgcagacat gtgtggagaa cagggaattg atagctgctg 1261 agctgaagca gtgggttcag ctggtcatct tgtcatgtga agaccatctt cctacagagt 1321 ctaggctggc cgtcgttgaa gtcctcacca gtactacacc acttttcctc accaaccccc 1381 atcctattct tgagttgcag gatacacttg ctctctggaa gtgtgtcctt acccttctgc 1441 agagtgagga gcaagctgtt agagatgcag ccacggaaac cgtgacaact gccatgtcac 1501 aagaaaatac ctgccagtca acagagtttg ccttctgcca ggtggatgcc tccatcgctc 1561 tggccctggc cctggccgtc ctgtgtgatc tgctccagca gtgggaccag ttggcccctg 1621 gactgcccat cctgctggga tggctgttgg gagagagtga tgacctcgtg gcctgtgtgg 1681 agagcatgca tcaggtggaa gaagactacc tgtttgaaaa agcagaagtc aacttttggg 1741 ccgagaccct gatctttgtg aaatacctct gcaagcacct cttctgtctc ctctcaaagt 1801 ccggctggcg tcccccaagc cctgagatgc tctgtcacct tcaaaggatg gtgtcagagc 1861 agtgccacct cctgtctcag ttcttcagag agcttccacc agctgctgag tttgtgaaga 1921 cagtggagtt cacaagacta cgcattcaag aggaaaggac tttggcttgc ttgaggctgc 1981 tggccttttt ggaaggaaag gaaggggaag acaccctagt tctcagtgtt tgggactctt 2041 atgcagaatc gaggcagtta actcttccaa gaacagaagc ggcatgttgc ccaactttct 2101 tgtacaaagt ggttggtaag cctatcccta accctctcct cggtctcgat tctacgtagt 2161 aatgagctag cgctaaccgg tggcgcgtta agtcgacaat caacctctgg atta