Construct: ORF ccsbBroad304_12671
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005001.1_s304c1, BRDN0000406555
- Derived from:
- ccsbBroadEn_12671
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CCDC33 (80125)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_12671
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 80125 | CCDC33 | coiled-coil domain containi... | NM_182791.4 | 92.9% | 57.7% | 686_687delCC;1026_1101del |
| 2 | human | 80125 | CCDC33 | coiled-coil domain containi... | NM_001287181.2 | 83.6% | 69.2% | 686_687delCC;716_717ins102;924_999del |
| 3 | human | 80125 | CCDC33 | coiled-coil domain containi... | XM_017022632.2 | 76.6% | 54.8% | (many diffs) |
| 4 | human | 80125 | CCDC33 | coiled-coil domain containi... | XM_011522090.2 | 75.6% | 55.6% | (many diffs) |
| 5 | human | 80125 | CCDC33 | coiled-coil domain containi... | XM_011522089.3 | 63% | 43.7% | (many diffs) |
| 6 | human | 80125 | CCDC33 | coiled-coil domain containi... | XM_005254692.2 | 40.3% | 28.6% | (many diffs) |
| 7 | human | 80125 | CCDC33 | coiled-coil domain containi... | XM_011522087.2 | 40.3% | 28.6% | (many diffs) |
| 8 | human | 80125 | CCDC33 | coiled-coil domain containi... | XM_011522088.1 | 40.3% | 28.6% | (many diffs) |
| 9 | human | 80125 | CCDC33 | coiled-coil domain containi... | XM_011522086.1 | 40% | 28.4% | (many diffs) |
| 10 | human | 80125 | CCDC33 | coiled-coil domain containi... | NM_025055.5 | 37.5% | 28.6% | (many diffs) |
| 11 | human | 80125 | CCDC33 | coiled-coil domain containi... | XM_017022627.1 | 34.1% | 21.7% | (many diffs) |
| 12 | human | 80125 | CCDC33 | coiled-coil domain containi... | XM_017022625.1 | 33.4% | 21.2% | (many diffs) |
| 13 | human | 80125 | CCDC33 | coiled-coil domain containi... | XM_017022623.1 | 32.7% | 20.9% | (many diffs) |
| 14 | human | 80125 | CCDC33 | coiled-coil domain containi... | XM_011522085.3 | 31.9% | 22.8% | (many diffs) |
| 15 | human | 80125 | CCDC33 | coiled-coil domain containi... | XM_017022628.1 | 30% | 23.3% | (many diffs) |
| 16 | human | 80125 | CCDC33 | coiled-coil domain containi... | XM_017022626.2 | 29.4% | 22.5% | (many diffs) |
| 17 | human | 80125 | CCDC33 | coiled-coil domain containi... | XM_017022624.1 | 28.6% | 23.3% | (many diffs) |
| 18 | human | 80125 | CCDC33 | coiled-coil domain containi... | XR_001751401.1 | 22.1% | (many diffs) | |
| 19 | human | 80125 | CCDC33 | coiled-coil domain containi... | XR_001751400.1 | 21.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1089
- ORF length:
- 1023
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatggg ggagccaggg cccccatccc ctccagcccc caaggctgcc ccaggcctca 121 ttgacagctt ctctgagatg aacaactacc ggcgggccat gcagaagatg gcagaggaca 181 tcctgtctct gcggagacag gccagcatcc tggaaggaga gaaccgcata ctgaggagcc 241 gcctggccca gcaggaggag gaagaggggc agggcaaagc cagtgaggcc cagaacacgg 301 tgtccatgaa gcagaaactg ctgctgagtg agctggatat gaagaaactg agggacaggg 361 tgcagcattt gcagaatgag ctgattcgaa agaatgatcg agagaaggag ctgctccttc 421 tgtatcaggc ccagcagcca caggccgctc tgctgaagca gtaccagggc aagctgcaga 481 agatgaaggc gctggaggag actgtgcggc accaagagaa ggtgatcgag aagatggagc 541 gggtgctgga ggacaggctg caggacagga gcaagccccc tcctctgaac aggcagcagg 601 gaaagcccta cacgggcttc cctatgctct cagcctctgg ccttcccttg ggttctatgg 661 gagagaacct gccggttgaa ctttactcgg tgctgctggc agaaaacgcg aagctgcgga 721 cggagctgga taagaaccgc caccagcagg cccatcattc tgcagcaaca ggccctgccg 781 gtggaccccg gggagttggg agcaggagga gacttgacag agaggctaca agagacgcat 841 ggcccaggcc actcagagtg cacagagacc ctgcccgcac aggatctcct ctctggtact 901 tcagacaagt tcaacctcct ggccaagctg gaacacgctc agagccggat cctgtccctg 961 gaaagccagt tagaggactc agctcgacgc tggggacgag agaagcagga tctggccaca 1021 cggctgcagg agcaagaaaa aggtttcagg cacccctcga actccatcat catagaacag 1081 cctgtgagtg cccaactttc ttgtacaaag tggttggtaa gcctatccct aaccctctcc 1141 tcggtctcga ttctacgtag taatgagcta gcgctaaccg gtggcgcgtt aagtcgacaa 1201 tcaacctctg gatta